Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6613

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6612: 14980 - Hypothetical Protein, at 1243315 to 1245025 14980 mRNA_6613: 14981 - K08740 MSH4 DNA mismatch repair protein MSH4, at 1245585 to 1249013 14981 mRNA_6614: 14982 - HMMPfam-MRC1-like domain-PF09444, at 1249488 to 1254442 14982

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,244,835 - 14980 mRNA_6612 0.89 -0.0
1,244,843 - 14980 mRNA_6612 0.89 -2.2
1,244,847 + 14980 mRNA_6612 0.90 1.8
1,244,984 + -0.1
1,244,985 - 0.5
1,245,000 - 0.2
1,245,131 - 0.2
1,245,149 - -0.2
1,245,164 + 1.1
1,245,284 - 0.6
1,245,427 + -0.3
1,245,438 + -0.0
1,245,440 - -0.1
1,245,452 + -0.5
1,245,734 - 1.6
1,245,759 + 0.9
1,245,847 - 1.3
1,245,858 + 0.2
1,245,995 - 14981 mRNA_6613 0.12 2.2
1,246,025 - 14981 mRNA_6613 0.13 1.1
1,246,182 + 14981 mRNA_6613 0.17 0.5
1,246,182 + 14981 mRNA_6613 0.17 0.1
1,246,614 + 14981 mRNA_6613 0.30 0.7
1,246,895 - 14981 mRNA_6613 0.38 1.1
1,247,063 - 14981 mRNA_6613 0.43 -0.6
1,247,082 + 14981 mRNA_6613 0.44 0.3
1,247,521 + 14981 mRNA_6613 0.56 0.1
1,247,625 - 14981 mRNA_6613 0.59 0.1
1,248,544 + 14981 mRNA_6613 0.86 2.2
1,248,657 - 14981 mRNA_6613 0.90 1.2
1,249,002 + 1.1
1,249,244 - 1.5
1,249,250 + 1.9
1,249,251 - 0.6
1,249,287 - -1.4
1,249,291 - -0.4
1,249,461 + 0.2