Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6578

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6577: 14945 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013,SUPERFAMILY--SSF54160, at 1143397 to 1147463 14945 mRNA_6578: 14946 - HMMPfam-pfkB family carbohydrate kinase-PF00294,SUPERFAMILY--SSF53613, at 1147858 to 1149094 14946 mRNA_6579: 14947 - KOG0871 Class 2 transcription repressor NC2, beta subunit (Dr1), at 1149155 to 1149894 14947 mRNA_6580: 14948 - K11098 SNRPF, SMF small nuclear ribonucleoprotein F, at 1150029 to 1150564 14948

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,146,973 - 14945 mRNA_6577 0.88 -0.3
1,147,186 + -0.9
1,147,323 - -0.5
1,147,473 - 0.7
1,147,489 - -0.5
1,147,617 - -0.5
1,147,617 - 2.5
1,147,633 + -0.1
1,147,772 + -0.7
1,147,800 + 1.4
1,147,941 + 0.8
1,148,358 - 14946 mRNA_6578 0.40 1.4
1,148,954 + 14946 mRNA_6578 0.89 -0.2
1,149,074 - 0.9
1,149,156 + 1.2
1,149,955 - -0.4