Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6491

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6490: 14858 - KOG1698 Mitochondrial/chloroplast ribosomal protein L19, at 911663 to 912456 14858 mRNA_6491: 14859 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 912748 to 918213 14859 mRNA_6492: 14860 - KOG3269 Predicted membrane protein, at 918835 to 919868 14860

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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912,405 + -0.1
912,748 - 1.7
912,750 + -0.1
912,759 + -0.2
912,890 + -1.6
913,187 - -0.6
913,188 + 0.5
913,344 - 14859 mRNA_6491 0.11 1.3
913,357 - 14859 mRNA_6491 0.11 -0.9
913,454 + 14859 mRNA_6491 0.13 0.1
913,598 + 14859 mRNA_6491 0.16 0.1
913,720 + 14859 mRNA_6491 0.18 0.4
913,758 - 14859 mRNA_6491 0.18 0.1
913,911 + 14859 mRNA_6491 0.21 -0.0
913,924 - 14859 mRNA_6491 0.22 -0.4
913,928 + 14859 mRNA_6491 0.22 0.9
913,944 + 14859 mRNA_6491 0.22 -0.0
914,148 + 14859 mRNA_6491 0.26 -0.2
914,379 + 14859 mRNA_6491 0.30 -1.0
914,447 + 14859 mRNA_6491 0.31 -0.1
914,489 + 14859 mRNA_6491 0.32 2.0
914,854 + 14859 mRNA_6491 0.39 0.9
915,176 - 14859 mRNA_6491 0.44 1.8
915,321 + 14859 mRNA_6491 0.47 -1.0
915,411 - 14859 mRNA_6491 0.49 -0.2
915,423 - 14859 mRNA_6491 0.49 0.2
915,684 + 14859 mRNA_6491 0.54 -0.7
916,221 + 14859 mRNA_6491 0.64 -0.9
916,360 - 14859 mRNA_6491 0.66 -0.3
916,509 - 14859 mRNA_6491 0.69 -0.1
916,561 + 14859 mRNA_6491 0.70 2.4
916,763 - 14859 mRNA_6491 0.73 0.4
916,804 + 14859 mRNA_6491 0.74 1.6
917,070 - 14859 mRNA_6491 0.79 0.2
917,112 - 14859 mRNA_6491 0.80 -1.1
917,538 - 14859 mRNA_6491 0.88 0.6
917,550 + 14859 mRNA_6491 0.88 -0.1
918,114 - 2.1
918,383 - 1.5
918,390 + 1.7
918,419 + 0.9
918,420 + -1.1
918,439 - -0.1
918,439 + 2.6
918,582 - 1.2
918,583 - -0.3
918,586 + 0.7
919,005 - 14860 mRNA_6492 0.16 2.3
919,023 + 14860 mRNA_6492 0.18 -1.4