Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6487

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6486: 14854 - K08294 MKK1_2 mitogen-activated protein kinase kinase, at 900253 to 901810 14854 mRNA_6487: 14855 - K11237 BEM1 bud emergence protein 1, at 902586 to 904816 14855 mRNA_6488: 14856 - K01655 LYS21, LYS20 homocitrate synthase, at 905172 to 907549 14856

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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901,588 + 14854 mRNA_6486 0.86 0.2
901,936 - 0.6
901,961 - -0.3
901,962 + 1.5
901,963 - -0.4
901,967 + 1.0
901,986 + 0.6
901,989 + -0.5
901,997 - -0.8
902,020 + 0.6
902,095 - -0.2
902,104 + -0.9
902,129 - 0.1
902,134 + -0.9
902,143 - 0.3
902,157 + 0.2
902,161 + 1.8
902,178 - 0.4
902,252 - -0.5
902,279 - -2.1
902,291 + 1.2
902,298 - 1.0
902,308 + -0.3
902,364 - 0.8
902,364 + -0.1
902,415 + -0.1
902,428 - -0.7
902,572 - 1.8
902,579 - -0.2
902,594 - 0.8
902,643 + 0.1
902,884 + 14855 mRNA_6487 0.13 0.7
903,001 - 14855 mRNA_6487 0.19 1.0
903,062 + 14855 mRNA_6487 0.21 0.7
903,265 + 14855 mRNA_6487 0.30 0.3
903,743 + 14855 mRNA_6487 0.52 -0.0
903,866 + 14855 mRNA_6487 0.57 0.9
903,893 - 14855 mRNA_6487 0.59 2.9
903,981 - 14855 mRNA_6487 0.63 1.2
904,618 + 0.5
904,857 - -0.2
904,883 - 0.2
904,883 - -0.4
904,897 - 0.6
904,899 + -0.8
904,899 - 0.6
904,922 - 0.2
904,923 + 0.6
904,994 + -0.8
904,998 - 1.4
905,047 - 0.3
905,050 + 0.7
905,059 + -0.2
905,073 - -0.1
905,075 - 1.0
905,089 - -0.3
905,091 - -1.3
905,092 + -1.2
905,093 + 1.3
905,110 - 1.1
905,408 - -1.0
905,562 + 14856 mRNA_6488 0.16 -1.6