Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6467

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6466: 14834 - Hypothetical Protein, at 848394 to 849782 14834 mRNA_6467: 14835 - K20242 EVI5 ecotropic viral integration site 5 protein, at 850077 to 853413 14835 mRNA_6468: 14836 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 853896 to 857931 14836

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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849,270 - 14834 mRNA_6466 0.63 1.0
849,282 - 14834 mRNA_6466 0.64 -0.6
849,283 + 14834 mRNA_6466 0.64 0.4
849,424 + 14834 mRNA_6466 0.74 1.3
849,550 - 14834 mRNA_6466 0.83 -0.4
849,555 - 14834 mRNA_6466 0.84 -1.4
849,687 + -0.2
849,694 - -0.1
849,715 + -0.6
849,723 + -0.2
849,832 - -1.2
849,860 - 0.9
849,871 - 0.8
849,877 - -0.3
849,988 + -0.2
849,989 - 0.3
849,999 - 1.1
849,999 - -0.6
850,005 - -1.1
850,007 - 1.2
850,018 + 0.2
850,019 + 0.4
850,026 + -0.1
850,029 - -0.0
850,033 + 1.3
850,035 - -0.0
850,145 - 3.0
850,151 - 0.7
850,157 + 0.2
850,180 - 0.0
850,186 + -0.5
850,319 + 0.1
850,330 + 0.2
850,338 + 0.3
850,446 - 14835 mRNA_6467 0.11 1.5
850,599 - 14835 mRNA_6467 0.16 0.9
850,747 - 14835 mRNA_6467 0.20 0.3
850,870 + 14835 mRNA_6467 0.24 0.3
850,873 - 14835 mRNA_6467 0.24 0.9
851,384 + 14835 mRNA_6467 0.39 0.0
851,600 - 14835 mRNA_6467 0.46 -0.4
851,817 + 14835 mRNA_6467 0.52 -0.0
851,870 + 14835 mRNA_6467 0.54 -0.6
851,876 - 14835 mRNA_6467 0.54 0.3
852,013 + 14835 mRNA_6467 0.58 -0.6
852,016 - 14835 mRNA_6467 0.58 0.3
852,056 - 14835 mRNA_6467 0.59 -0.5
852,333 - 14835 mRNA_6467 0.68 -1.6
852,615 - 14835 mRNA_6467 0.76 0.1
852,648 - 14835 mRNA_6467 0.77 1.9
853,044 + 14835 mRNA_6467 0.89 1.2
853,284 + 0.6
853,354 + 0.7
853,377 - 0.7
853,382 + -0.1
853,455 + -0.1
853,586 - 0.6
853,589 - -0.1
853,797 - -1.7
853,911 - 1.6
854,032 - 2.9
854,083 + 0.5
854,320 - 14836 mRNA_6468 0.11 1.5