Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6434

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6433: 14801 - K12180 COPS7, CSN7 COP9 signalosome complex subunit 7, at 789986 to 791469 14801 mRNA_6434: 14802 - K01904 4CL 4-coumarate--CoA ligase, at 791667 to 793929 14802 mRNA_6435: 14803 - K01930 FPGS folylpolyglutamate synthase, at 794162 to 796213 14803

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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790,856 + 14801 mRNA_6433 0.59 -1.2
791,104 - 14801 mRNA_6433 0.75 -0.2
791,109 + 14801 mRNA_6433 0.76 -1.4
791,113 - 14801 mRNA_6433 0.76 0.2
791,399 + -0.1
791,425 + 0.1
791,592 + -0.6
791,603 - -0.2
791,610 - 0.6
791,611 + -0.4
791,617 + -1.5
791,627 + 0.3
791,630 - 2.5
791,757 + 0.8
791,759 - 0.0
791,883 + -0.4
791,901 + 14802 mRNA_6434 0.10 0.2
792,046 - 14802 mRNA_6434 0.17 1.6
792,152 + 14802 mRNA_6434 0.21 0.5
792,186 - 14802 mRNA_6434 0.23 -0.5
792,334 + 14802 mRNA_6434 0.29 0.9
792,355 - 14802 mRNA_6434 0.30 0.3
792,362 + 14802 mRNA_6434 0.31 0.3
792,477 + 14802 mRNA_6434 0.36 -0.2
792,644 - 14802 mRNA_6434 0.43 -0.7
792,772 + 14802 mRNA_6434 0.49 -0.6
792,878 - 14802 mRNA_6434 0.54 0.5
793,099 + 14802 mRNA_6434 0.63 0.7
793,231 - 14802 mRNA_6434 0.69 -2.4
793,595 - 14802 mRNA_6434 0.85 0.5
793,947 - -0.1
794,023 + 0.9
794,075 - 0.0