Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6381

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6380: 14748 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 678421 to 679401 14748 mRNA_6381: 14749 - Interpro F-box-like, at 679604 to 681699 14749 mRNA_6382: 14750 - Hypothetical Protein, at 682281 to 684206 14750

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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678,638 - 14748 mRNA_6380 0.22 -2.0
678,649 - 14748 mRNA_6380 0.23 -1.1
678,675 - 14748 mRNA_6380 0.26 -0.3
678,955 + 14748 mRNA_6380 0.54 -0.3
679,249 + 14748 mRNA_6380 0.84 0.2
679,370 - 0.5
679,439 + -1.4
679,527 - 0.7
679,572 - -0.0
679,980 + 14749 mRNA_6381 0.18 -1.2
680,227 - 14749 mRNA_6381 0.30 -1.2
680,228 + 14749 mRNA_6381 0.30 -0.5
680,247 + 14749 mRNA_6381 0.31 -0.6
680,531 - 14749 mRNA_6381 0.44 0.4
680,532 + 14749 mRNA_6381 0.44 -0.5
680,585 - 14749 mRNA_6381 0.47 1.1
680,688 - 14749 mRNA_6381 0.52 -0.2
680,707 + 14749 mRNA_6381 0.53 -0.3
681,255 + 14749 mRNA_6381 0.79 -0.2
681,671 + -0.2
681,682 - 0.5
681,702 - -0.0
681,727 + 1.0
681,736 + 1.1
681,760 + -1.1
681,858 - -0.4
681,873 - 0.1
681,874 + 1.0
681,881 + 0.5
681,890 - 1.4
681,892 - -1.1
681,896 - 0.5
681,903 + -1.9
681,905 + 1.0
681,927 - -0.0
681,939 - 1.1
682,015 - 0.6
682,021 + 0.3
682,093 + 0.2
682,093 - 1.2
682,096 + 1.2
682,112 + 0.2
682,365 - 3.7
682,650 - 14750 mRNA_6382 0.19 2.2