Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6380

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6379: 14747 - Hypothetical Protein, at 676687 to 677946 14747 mRNA_6380: 14748 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 678421 to 679401 14748 mRNA_6381: 14749 - Interpro F-box-like, at 679604 to 681699 14749

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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677,766 - 14747 mRNA_6379 0.86 0.2
677,780 - 14747 mRNA_6379 0.87 -0.4
677,804 + 14747 mRNA_6379 0.89 3.0
678,013 + -1.9
678,344 - -0.3
678,345 + -1.0
678,517 - -0.5
678,534 - 14748 mRNA_6380 0.12 -0.4
678,638 - 14748 mRNA_6380 0.22 -2.0
678,649 - 14748 mRNA_6380 0.23 -1.1
678,675 - 14748 mRNA_6380 0.26 -0.3
678,955 + 14748 mRNA_6380 0.54 -0.3
679,249 + 14748 mRNA_6380 0.84 0.2
679,370 - 0.5
679,439 + -1.4
679,527 - 0.7
679,572 - -0.0
679,980 + 14749 mRNA_6381 0.18 -1.2
680,227 - 14749 mRNA_6381 0.30 -1.2
680,228 + 14749 mRNA_6381 0.30 -0.5
680,247 + 14749 mRNA_6381 0.31 -0.6