Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6374

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6373: 14741 - K03013 RPB5, POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1, at 662336 to 663388 14741 mRNA_6374: 14742 - K20464 OSBPL5_8, ORP5_8 oxysterol-binding protein-related protein 5/8, at 663767 to 666324 14742 mRNA_6375: 14743 - K01178 E3.2.1.3 glucoamylase, at 666615 to 668807 14743

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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663,576 + -0.3
663,798 - 0.4
664,174 + 14742 mRNA_6374 0.16 -0.1
664,749 - 14742 mRNA_6374 0.38 0.7
665,042 - 14742 mRNA_6374 0.50 0.2
665,332 - 14742 mRNA_6374 0.61 -0.4
665,443 - 14742 mRNA_6374 0.66 0.0
665,473 - 14742 mRNA_6374 0.67 2.3
665,763 + 14742 mRNA_6374 0.78 -0.3
665,891 - 14742 mRNA_6374 0.83 -0.5
665,899 - 14742 mRNA_6374 0.83 -0.0
665,900 - 14742 mRNA_6374 0.83 -0.3
665,910 + 14742 mRNA_6374 0.84 -1.1
665,929 - 14742 mRNA_6374 0.85 0.8
665,939 + 14742 mRNA_6374 0.85 0.2
666,026 - 14742 mRNA_6374 0.88 0.3
666,042 + 14742 mRNA_6374 0.89 -0.2
666,042 + 14742 mRNA_6374 0.89 0.2
666,045 - 14742 mRNA_6374 0.89 -0.3
666,057 - 14742 mRNA_6374 0.90 -0.2
666,068 + 14742 mRNA_6374 0.90 0.5
666,069 + 1.6
666,070 - 1.4
666,070 - 1.7
666,072 + 1.9
666,075 + -0.1
666,174 + 0.6
666,203 - -0.5
666,204 + 0.1
666,205 + 0.1
666,208 - -0.3
666,211 - -0.5
666,215 - -0.4
666,220 + 0.6
666,243 - -0.5
666,341 - 0.0
666,349 - -0.3
666,356 + 0.4
666,392 + 0.2
666,666 - 0.2
666,979 + 14743 mRNA_6375 0.17 -0.2
667,258 - 14743 mRNA_6375 0.29 1.0
667,264 - 14743 mRNA_6375 0.30 -0.7