Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6330

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6329: 14697 - BLAST clp1-like protein [Moniliophthora roreri MCA 2997], at 559094 to 560421 14697 mRNA_6330: 14698 - K03119 tauD taurine dioxygenase, at 560667 to 562112 14698 mRNA_6331: 14699 - Hypothetical Protein, at 562963 to 566521 14699

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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559,794 - 14697 mRNA_6329 0.53 1.2
559,819 - 14697 mRNA_6329 0.55 -0.9
559,850 + 14697 mRNA_6329 0.57 0.4
559,968 - 14697 mRNA_6329 0.66 0.4
560,291 - -0.1
560,413 + -0.9
560,453 + -1.1
560,464 + -1.5
560,541 + -0.1
561,135 - 14698 mRNA_6330 0.32 -0.2
561,182 - 14698 mRNA_6330 0.36 0.4
561,184 - 14698 mRNA_6330 0.36 -0.5
561,189 - 14698 mRNA_6330 0.36 0.7
561,311 + 14698 mRNA_6330 0.45 -0.7
561,327 - 14698 mRNA_6330 0.46 0.3
561,812 + 14698 mRNA_6330 0.79 0.2
561,898 + 14698 mRNA_6330 0.85 -0.1
562,063 + 0.6
562,152 + -0.7
562,175 + -0.2
562,287 - 2.3
562,314 - -0.1
562,321 + -0.6
562,328 - 0.7
562,407 - -0.3
562,467 - 1.1
562,471 + 1.9
562,477 + -0.9
562,480 - -0.0
562,484 - 0.4
562,491 + 1.6
562,496 - 0.7
562,497 + 0.1
562,501 + 0.1
562,503 - 1.1
562,507 + 0.6
562,507 + 0.2
562,511 + 1.6
562,518 + -0.5
562,617 - -1.1
562,619 + -0.7
562,622 - 1.5
562,623 + 0.2
562,624 + 0.4
562,624 + 1.4
562,632 + -0.9
562,633 + -0.0
562,640 - 0.8
562,641 - 1.5
562,646 + 0.2
562,658 + -0.1
562,927 - 1.8
562,932 - 0.7
562,932 - 1.5
562,933 + 0.6
562,942 - 0.3
562,955 + -0.2
563,107 - 3.0