Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6316

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6315: 14683 - K10609 CUL4 cullin 4, at 528215 to 531333 14683 mRNA_6316: 14684 - Hypothetical Protein, at 531577 to 532542 14684 mRNA_6317: 14685 - K11649 SMARCC SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C, at 532881 to 534866 14685

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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530,730 - 14683 mRNA_6315 0.81 -2.4
530,884 + 14683 mRNA_6315 0.86 0.7
531,001 - 14683 mRNA_6315 0.89 -0.5
531,177 + 1.9
531,297 - -0.2
531,300 + 0.0
531,315 + 0.5
531,465 + -1.2
531,465 + 1.2
531,466 + 2.6
531,466 + -1.6
531,474 + 0.3
531,482 + 0.8
531,483 - 0.9
531,495 - 0.9
531,637 + 0.8
531,654 + -0.6
531,655 - 1.6
531,775 - 14684 mRNA_6316 0.20 -0.3
531,804 - 14684 mRNA_6316 0.23 -0.1
531,811 + 14684 mRNA_6316 0.24 -1.5
531,819 + 14684 mRNA_6316 0.25 3.4
531,943 - 14684 mRNA_6316 0.38 -0.7
531,949 - 14684 mRNA_6316 0.39 -0.6
531,965 + 14684 mRNA_6316 0.40 -0.6
531,979 + 14684 mRNA_6316 0.42 1.5
531,985 + 14684 mRNA_6316 0.42 0.4
531,986 + 14684 mRNA_6316 0.42 -0.8
532,074 + 14684 mRNA_6316 0.51 0.8
532,091 + 14684 mRNA_6316 0.53 -0.1
532,101 + 14684 mRNA_6316 0.54 0.3
532,104 - 14684 mRNA_6316 0.55 0.7
532,105 - 14684 mRNA_6316 0.55 0.0
532,108 - 14684 mRNA_6316 0.55 0.7
532,109 + 14684 mRNA_6316 0.55 0.7
532,121 + 14684 mRNA_6316 0.56 -0.8
532,126 - 14684 mRNA_6316 0.57 0.2
532,129 + 14684 mRNA_6316 0.57 0.6
532,172 + 14684 mRNA_6316 0.62 2.0
532,240 - 14684 mRNA_6316 0.69 0.1
532,251 - 14684 mRNA_6316 0.70 0.3
532,251 - 14684 mRNA_6316 0.70 1.8
532,288 + 14684 mRNA_6316 0.74 -0.1
532,731 - 0.1
532,740 + -0.6
532,873 - -0.7
532,878 - 2.2
532,893 + 1.3