Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6258

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6257: 14625 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 368702 to 371060 14625 mRNA_6258: 14626 - K01687 ilvD dihydroxy-acid dehydratase, at 371903 to 374480 14626 mRNA_6259: 14627 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 374998 to 377098 14627

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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371,002 - -1.0
371,210 - 1.6
371,293 + 0.7
372,120 - 0.3
372,178 + 14626 mRNA_6258 0.11 -0.3
372,886 - 14626 mRNA_6258 0.38 0.6
373,064 + 14626 mRNA_6258 0.45 0.8
373,185 + 14626 mRNA_6258 0.50 0.3
373,226 - 14626 mRNA_6258 0.51 0.4
373,304 + 14626 mRNA_6258 0.54 -0.1
373,349 + 14626 mRNA_6258 0.56 1.8
373,756 - 14626 mRNA_6258 0.72 0.7
373,804 + 14626 mRNA_6258 0.74 -0.9
374,321 + 1.0
374,481 + -0.9
374,488 + -0.4
374,512 + -0.7
374,627 + -1.1
374,628 + -1.0
374,639 + 1.1
374,639 - 1.1
374,647 + 1.3
374,648 - 0.3
374,650 - 0.1
374,668 - 1.0
374,671 - 0.8
374,676 + 0.2
374,676 + -0.5
374,720 + 0.7
374,723 + -0.9
374,724 + -0.5
374,732 + -0.2
374,743 + -0.4
374,835 - 1.1
374,838 + 0.1
374,847 - 1.3
374,861 + -1.2
374,861 + -0.1
374,882 + 0.2
374,892 + -3.2
374,901 - -1.2
374,901 + 0.2
374,911 - 0.8
374,919 + -0.1
374,925 - 1.4
374,925 - 0.5
374,928 + 0.6
374,930 + 0.0
374,932 + -0.3
374,932 + -0.1
374,934 - -0.9
374,934 - 0.4
374,935 + -0.1
374,937 + -0.5
374,937 + 0.1
374,943 + 0.0
374,946 - -0.3
374,947 + 0.2
374,948 + -1.3
374,948 - 1.6
374,951 + 1.1
374,952 + -1.1
374,954 + -0.1
374,957 - -0.4
375,055 + 0.1
375,125 + 1.1
375,393 - 14627 mRNA_6259 0.19 -0.5
375,395 - 14627 mRNA_6259 0.19 -0.2
375,429 + 14627 mRNA_6259 0.21 0.2