Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6183

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6182: 14550 - K06665 SSN6 glucose repression mediator protein, at 196153 to 199901 14550 mRNA_6183: 14551 - Hypothetical Protein, at 200560 to 201520 14551 mRNA_6184: 14552 - Hypothetical Protein, at 202342 to 203677 14552

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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199,673 + -2.1
199,684 + -2.6
199,806 - 1.5
199,819 - -1.8
199,820 - -3.3
199,856 + -0.1
199,937 - 0.5
199,956 + -1.0
199,971 + -1.0
199,987 + -3.4
199,998 + 1.2
200,004 + -0.1
200,104 - 0.2
200,110 - 0.7
200,115 - 0.5
200,119 - -0.4
200,121 - 0.5
200,121 - -0.2
200,122 + -0.6
200,131 - -1.6
200,139 + -0.5
200,140 - 1.4
200,141 + -0.7
200,147 - -1.0
200,151 + 0.6
200,164 + -0.1
200,171 - 1.4
200,245 + 1.1
200,249 - 0.0
200,259 - 0.7
200,266 - -1.1
200,267 + -0.5
200,269 - -0.3
200,272 - 0.2
200,274 - 1.4
200,274 + 1.0
200,276 - -0.2
200,276 - 0.9
200,279 + -0.4
200,281 + -0.9
200,290 + -0.9
200,292 - -0.9
200,292 + 1.5
200,294 - 1.0
200,294 + -0.6
200,294 + 0.2
200,296 + -1.0
200,298 + 1.4
200,301 + -0.5
200,304 + 1.0
200,307 + 1.0
200,310 + 1.3
200,315 + -0.3
200,318 + 0.3
200,340 + 1.2
200,342 + 2.0
200,377 + 0.2
200,389 - -0.1
200,390 + 0.0
200,393 - 1.1
200,403 - 0.3
200,406 + -2.2
200,415 + 0.4
200,498 - -0.3
200,549 + -0.9
200,555 + 2.7
200,558 - 1.3
200,560 - 0.1
200,563 - 1.5
200,570 - 0.8
200,574 - -0.1
200,574 - 0.4
200,589 + 0.3
200,590 - 1.5
200,598 + 0.0
200,599 - -0.6
200,601 + 1.2
200,602 - 2.9
200,602 + 1.2
200,603 - 1.0
200,603 - 0.5
200,604 - 1.0
200,609 - -1.5
200,616 - 0.2
200,619 + 0.9
200,622 + -0.5
200,626 - 0.3
200,629 + -0.5
200,632 + 0.7
200,633 + 0.8
200,634 - -0.3
200,638 + -0.8
200,639 + 0.4
200,641 - 0.6
200,643 + -0.5
200,643 + -0.0
200,644 + -0.1
200,652 + -0.8
200,737 + 14551 mRNA_6183 0.18 0.7
200,755 - 14551 mRNA_6183 0.20 0.1
200,757 + 14551 mRNA_6183 0.20 -0.9
200,760 - 14551 mRNA_6183 0.21 -0.2
200,761 + 14551 mRNA_6183 0.21 -0.5
200,761 + 14551 mRNA_6183 0.21 0.1
200,772 + 14551 mRNA_6183 0.22 -0.1
200,781 + 14551 mRNA_6183 0.23 -0.1
200,781 - 14551 mRNA_6183 0.23 -0.3
200,786 - 14551 mRNA_6183 0.24 0.9
200,788 + 14551 mRNA_6183 0.24 1.7
200,798 - 14551 mRNA_6183 0.25 1.7
200,799 - 14551 mRNA_6183 0.25 -2.2
200,799 + 14551 mRNA_6183 0.25 0.3
200,800 + 14551 mRNA_6183 0.25 -0.3
200,804 - 14551 mRNA_6183 0.25 -0.5
200,832 + 14551 mRNA_6183 0.28 0.3
200,943 - 14551 mRNA_6183 0.40 0.7
200,958 + 14551 mRNA_6183 0.41 -0.4
200,986 + 14551 mRNA_6183 0.44 0.3
201,033 + 14551 mRNA_6183 0.49 0.8
201,036 + 14551 mRNA_6183 0.50 1.2
201,042 + 14551 mRNA_6183 0.50 1.7
201,048 - 14551 mRNA_6183 0.51 0.7
201,053 + 14551 mRNA_6183 0.51 0.3
201,063 - 14551 mRNA_6183 0.52 -0.4
201,068 - 14551 mRNA_6183 0.53 0.2
201,070 + 14551 mRNA_6183 0.53 1.8
201,070 - 14551 mRNA_6183 0.53 1.0
201,077 - 14551 mRNA_6183 0.54 -0.9
201,082 - 14551 mRNA_6183 0.54 0.1
201,086 + 14551 mRNA_6183 0.55 -1.4
201,088 - 14551 mRNA_6183 0.55 0.0
201,094 + 14551 mRNA_6183 0.56 0.4
201,095 - 14551 mRNA_6183 0.56 1.1
201,096 + 14551 mRNA_6183 0.56 1.8
201,110 - 14551 mRNA_6183 0.57 0.2
201,128 - 14551 mRNA_6183 0.59 1.0
201,139 - 14551 mRNA_6183 0.60 0.2
201,148 - 14551 mRNA_6183 0.61 -0.3
201,157 + 14551 mRNA_6183 0.62 1.9
201,159 - 14551 mRNA_6183 0.62 -0.1
201,161 - 14551 mRNA_6183 0.63 -0.7
201,171 + 14551 mRNA_6183 0.64 -0.7
201,183 + 14551 mRNA_6183 0.65 -0.1
201,188 - 14551 mRNA_6183 0.65 2.2
201,189 + 14551 mRNA_6183 0.65 1.3
201,192 - 14551 mRNA_6183 0.66 -0.2
201,200 - 14551 mRNA_6183 0.67 -0.9
201,209 + 14551 mRNA_6183 0.68 2.6
201,209 + 14551 mRNA_6183 0.68 -0.6
201,212 + 14551 mRNA_6183 0.68 1.2
201,213 + 14551 mRNA_6183 0.68 -0.2
201,219 + 14551 mRNA_6183 0.69 -0.2
201,228 + 14551 mRNA_6183 0.70 0.6
201,235 - 14551 mRNA_6183 0.70 0.2
201,243 + 14551 mRNA_6183 0.71 -0.7
201,264 + 14551 mRNA_6183 0.73 0.7
201,292 - 14551 mRNA_6183 0.76 -0.3
201,345 + 14551 mRNA_6183 0.82 0.8
201,366 - 14551 mRNA_6183 0.84 -0.3
201,399 + 14551 mRNA_6183 0.87 2.5
201,422 + 14551 mRNA_6183 0.90 0.6
201,431 + 0.7
201,448 - -0.0
201,457 - 0.1
201,468 - 0.3
201,469 - 0.1
201,471 - 0.3
201,473 - -0.7
201,479 - 0.4
201,482 + -0.6
201,492 + 0.7
201,493 - 1.2
201,493 + 0.5
201,635 - 0.2
201,648 + 1.9
201,649 - -0.8
201,663 - 0.1
201,682 - 0.4
201,804 + 0.0
201,931 + 0.1
201,961 - -0.2
202,094 + 0.1
202,103 + 0.2