Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6142

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6141: 14509 - HMMPfam-GGL domain-PF00631,SUPERFAMILY--SSF48670, at 106663 to 106926 14509 mRNA_6142: 14510 - Hypothetical Protein, at 107739 to 108173 14510 mRNA_6143: 14511 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 108337 to 111111 14511

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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106,999 - 1.2
107,009 + 0.3
107,019 + 0.2
107,025 - 1.5
107,029 - -0.5
107,034 - 0.3
107,155 + 0.3
107,166 + 0.1
107,170 + 1.7
107,171 + -1.0
107,175 - -0.6
107,296 - 2.3
107,308 + -0.7
107,310 + 2.0
107,310 - 0.4
107,320 - -0.1
107,332 - 1.6
107,333 - 0.5
107,346 - 2.5
107,359 - 0.3
107,363 + 2.9
107,371 - 0.0
107,372 - -0.1
107,375 - 0.7
107,376 + -0.8
107,390 + 0.5
107,395 + 0.1
107,488 - 0.4
107,507 + 0.6
107,523 - -0.7
107,535 - 0.6
107,535 - 0.5
107,536 + 1.0
107,542 + 1.6
107,559 + -0.6
107,574 - -0.1
107,674 - 1.7
107,691 - 0.1
107,819 - 14510 mRNA_6142 0.18 2.6
107,981 + 14510 mRNA_6142 0.56 0.5
108,234 - -0.2
108,409 - 2.0
108,537 - 0.2
109,006 + 14511 mRNA_6143 0.24 -0.3
109,083 + 14511 mRNA_6143 0.27 -0.2