Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6106

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6106: 14474 - K08332 VAC8 vacuolar protein 8, at 223 to 3658 14474 mRNA_6107: 14475 - K14401 CPSF1, CFT1 cleavage and polyadenylation specificity factor subunit 1, at 3990 to 10005 14475

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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39 + 0.9
39 + 2.8
40 + 1.3
40 + 0.6
40 + -0.4
41 + 0.1
56 + 2.1
56 + 0.2
56 + 0.1
58 + 1.2
59 + 0.4
59 + -1.9
62 - 0.7
65 - -0.3
77 + 1.7
84 + -0.4
102 + 1.5
137 + 0.9
151 + -0.5
200 + -0.7
208 + 2.2
216 + 1.7
229 + 0.9
348 - 1.1
430 + 0.1
498 - 0.3
502 - 2.4
685 + 14474 mRNA_6106 0.13 0.4
747 + 14474 mRNA_6106 0.15 -1.0
755 + 14474 mRNA_6106 0.15 1.6
946 + 14474 mRNA_6106 0.21 -2.1
975 + 14474 mRNA_6106 0.22 1.5
1,245 + 14474 mRNA_6106 0.30 0.7
2,125 + 14474 mRNA_6106 0.55 -0.1
2,839 - 14474 mRNA_6106 0.76 -0.6
3,125 - 14474 mRNA_6106 0.84 0.3
3,248 - 14474 mRNA_6106 0.88 1.8
3,570 + 0.7
3,665 + 1.0
3,692 + 1.4
3,706 + 1.0
3,726 + -1.0
3,820 + 0.6
3,853 + 0.1
3,859 + 0.7
3,909 - -0.5
3,929 - -0.9