Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6000

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5999: 14367 - KOG1064 RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily, at 1417778 to 1422818 14367 mRNA_6000: 14368 - KOG2517 Ribulose kinase and related carbohydrate kinases, at 1423087 to 1425937 14368 mRNA_6001: 14369 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 1426118 to 1427755 14369

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,422,836 - 1.0
1,422,861 + 1.0
1,423,011 + -0.0
1,423,031 + -0.0
1,423,037 + -0.3
1,423,054 + 1.7
1,423,240 + 0.8
1,423,320 - 0.2
1,423,334 - -0.2
1,423,337 - 0.6
1,423,366 - -0.5
1,423,366 - -0.3
1,423,366 + -1.9
1,423,545 + 14368 mRNA_6000 0.16 0.2
1,424,105 - 14368 mRNA_6000 0.36 0.8
1,424,406 + 14368 mRNA_6000 0.46 2.0
1,424,869 + 14368 mRNA_6000 0.63 0.3
1,424,967 - 14368 mRNA_6000 0.66 -0.2
1,425,015 - 14368 mRNA_6000 0.68 0.1
1,425,327 - 14368 mRNA_6000 0.79 0.8
1,425,341 - 14368 mRNA_6000 0.79 -0.7
1,425,342 + 14368 mRNA_6000 0.79 1.2
1,425,356 + 14368 mRNA_6000 0.80 0.2
1,425,499 - 14368 mRNA_6000 0.85 0.7
1,425,535 + 14368 mRNA_6000 0.86 0.3
1,425,615 - 14368 mRNA_6000 0.89 2.6
1,425,683 - -0.0
1,425,825 + -1.7
1,425,841 + -0.4
1,425,909 + 1.1
1,425,922 - 0.9
1,426,307 - 14369 mRNA_6001 0.12 -0.1
1,426,499 - 14369 mRNA_6001 0.23 2.2
1,426,510 + 14369 mRNA_6001 0.24 -0.4
1,426,514 - 14369 mRNA_6001 0.24 -0.4
1,426,527 + 14369 mRNA_6001 0.25 2.3
1,426,692 + 14369 mRNA_6001 0.35 0.5
1,426,778 - 14369 mRNA_6001 0.40 0.7