Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5988

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5987: 14355 - HMMPfam-F-box-like-PF12937, at 1385071 to 1386352 14355 mRNA_5988: 14356 - K06111 EXOC4, SEC8 exocyst complex component 4, at 1386489 to 1391232 14356

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,385,518 - 14355 mRNA_5987 0.35 1.4
1,385,568 + 14355 mRNA_5987 0.39 1.1
1,385,580 - 14355 mRNA_5987 0.40 -1.1
1,385,622 + 14355 mRNA_5987 0.43 0.1
1,385,640 - 14355 mRNA_5987 0.44 -0.3
1,385,718 + 14355 mRNA_5987 0.50 0.4
1,385,761 + 14355 mRNA_5987 0.54 -0.3
1,385,766 + 14355 mRNA_5987 0.54 0.7
1,385,810 + 14355 mRNA_5987 0.58 -0.8
1,385,907 + 14355 mRNA_5987 0.65 0.9
1,385,910 - 14355 mRNA_5987 0.65 -0.2
1,386,060 - 14355 mRNA_5987 0.77 0.3
1,386,077 + 14355 mRNA_5987 0.78 0.4
1,386,089 - 14355 mRNA_5987 0.79 1.0
1,386,095 - 14355 mRNA_5987 0.80 -0.2
1,386,103 - 14355 mRNA_5987 0.80 -0.0
1,386,202 + 14355 mRNA_5987 0.88 0.1
1,386,314 + -0.8
1,386,563 - 0.5
1,386,630 - 1.9
1,386,730 + -0.9
1,386,747 + -0.4
1,386,783 - 1.4
1,386,930 + -0.7
1,386,980 - 14356 mRNA_5988 0.10 -1.0
1,387,021 + 14356 mRNA_5988 0.11 0.4
1,387,107 + 14356 mRNA_5988 0.13 0.4
1,387,213 - 14356 mRNA_5988 0.15 1.5
1,387,231 + 14356 mRNA_5988 0.16 -0.5
1,387,238 + 14356 mRNA_5988 0.16 1.2
1,387,774 + 14356 mRNA_5988 0.27 0.6
1,387,842 + 14356 mRNA_5988 0.29 1.5
1,387,844 + 14356 mRNA_5988 0.29 -0.9
1,387,845 - 14356 mRNA_5988 0.29 1.6
1,387,855 - 14356 mRNA_5988 0.29 -1.6
1,387,991 + 14356 mRNA_5988 0.32 0.7
1,387,992 - 14356 mRNA_5988 0.32 1.3
1,388,065 + 14356 mRNA_5988 0.33 0.4
1,388,167 - 14356 mRNA_5988 0.35 1.3
1,388,366 + 14356 mRNA_5988 0.40 1.2
1,388,526 + 14356 mRNA_5988 0.43 -0.8
1,388,600 + 14356 mRNA_5988 0.44 0.3
1,388,672 - 14356 mRNA_5988 0.46 -0.7
1,388,680 - 14356 mRNA_5988 0.46 0.1
1,388,988 - 14356 mRNA_5988 0.53 0.7
1,391,232 - 0.5
1,391,400 - 1.3
1,391,680 - -0.9
1,392,122 + 0.0
1,392,145 + 0.4