Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5932

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5931: 14299 - SUPERFAMILY--SSF51695, at 1261910 to 1263239 14299 mRNA_5932: 14300 - Hypothetical Protein, at 1264091 to 1265765 14300

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,263,268 - -0.3
1,263,268 - 0.7
1,263,382 - 1.0
1,263,421 - 0.6
1,263,432 + 2.1
1,263,439 - -1.7
1,263,440 + -0.7
1,263,441 - -0.7
1,263,449 - 0.5
1,263,451 + 1.1
1,263,453 - 2.0
1,263,461 + 0.9
1,263,464 + 0.1
1,263,474 + -0.3
1,263,484 + -0.9
1,263,486 + 0.5
1,263,490 + 0.4
1,263,500 - 0.8
1,263,506 + 1.9
1,263,507 + 0.1
1,263,510 + -0.5
1,263,513 - -0.1
1,263,555 - -0.6
1,263,570 - 0.2
1,263,577 + 0.4
1,263,580 + 0.8
1,263,588 + -0.0
1,263,590 + 0.8
1,263,602 + -0.7
1,263,618 - -1.1
1,263,623 - 1.8
1,263,705 - 0.6
1,263,728 + -0.2
1,263,756 + -0.4
1,263,781 + 0.3
1,263,829 + 0.0
1,263,835 + 0.6
1,263,891 - -0.1
1,264,008 + 0.8
1,264,049 + 0.7
1,264,491 - 14300 mRNA_5932 0.24 2.0
1,264,509 + 14300 mRNA_5932 0.25 2.8
1,264,524 + 14300 mRNA_5932 0.26 1.3
1,264,613 + 14300 mRNA_5932 0.31 1.6
1,264,653 - 14300 mRNA_5932 0.34 -1.8
1,264,771 - 14300 mRNA_5932 0.41 0.5
1,265,018 + 14300 mRNA_5932 0.55 -0.7
1,265,281 - 14300 mRNA_5932 0.71 1.5
1,265,334 - 14300 mRNA_5932 0.74 0.2
1,265,395 + 14300 mRNA_5932 0.78 -2.1
1,265,608 + -0.6
1,265,642 - 2.9
1,265,660 - 2.6
1,265,660 + -1.2
1,265,680 - 0.0
1,265,727 + 0.3
1,265,759 - 1.2
1,265,773 - 0.1
1,265,798 - 0.6
1,265,799 + 0.0
1,265,801 + 0.8
1,265,812 - -1.3
1,265,822 + -1.1
1,265,822 + 0.2
1,265,838 + 0.1
1,265,850 + -0.3
1,265,850 - -0.7
1,265,877 - -0.9
1,265,892 - -0.2
1,265,898 - -0.1
1,265,911 + -0.3
1,265,924 - -0.0
1,265,926 + -0.2
1,265,928 + 0.4
1,265,929 + 0.7
1,265,932 + 0.3
1,265,933 - -0.1
1,265,937 + -0.0
1,265,947 - -0.4
1,265,951 - -0.3
1,265,958 - -1.1
1,265,970 + -0.3
1,265,970 + 0.3
1,265,971 - -0.0
1,265,979 - -0.1
1,265,980 - 1.3
1,266,002 - 1.7
1,266,072 + 0.7
1,266,075 - 0.7
1,266,075 - 1.3
1,266,076 + 0.2
1,266,080 + -0.0
1,266,088 - 0.4
1,266,092 - 2.0
1,266,095 + 0.5
1,266,097 + 1.8
1,266,106 + -0.4
1,266,108 - -1.0
1,266,116 + 2.6
1,266,120 - 0.5
1,266,132 + -0.6
1,266,137 - -0.3
1,266,149 - 1.3
1,266,151 + -0.2
1,266,171 - 0.1
1,266,178 + 0.1
1,266,180 - -1.2
1,266,185 + -0.0
1,266,190 + 0.5
1,266,193 - 1.8
1,266,197 + 0.5
1,266,200 - -0.8
1,266,204 + 1.6
1,266,206 + 1.2
1,266,214 - -0.2
1,266,217 - 0.4
1,266,218 - -0.5
1,266,234 - 1.2
1,266,239 - -0.5
1,266,240 + 1.6
1,266,247 + -0.3
1,266,255 - 1.1
1,266,271 - 0.2
1,266,272 - 0.3
1,266,274 + -0.3
1,266,279 + 0.1
1,266,283 + 0.3
1,266,287 + 0.4
1,266,289 - -0.4
1,266,289 - 0.8
1,266,291 - -3.0
1,266,295 + -0.7
1,266,298 + -0.2
1,266,303 - 0.1
1,266,309 + 0.4
1,266,314 - -0.3
1,266,320 - 0.2
1,266,324 + 0.5
1,266,327 - 0.8
1,266,328 + -0.6
1,266,332 - 0.8
1,266,337 - 0.5
1,266,343 + 0.8
1,266,344 - 1.9
1,266,346 + -0.8
1,266,357 - 0.5
1,266,362 - -0.3
1,266,370 - 1.7
1,266,389 + -0.0
1,266,396 + 0.2
1,266,425 - 3.1
1,266,427 + 0.2
1,266,433 - 0.8
1,266,434 + -0.4
1,266,437 + -1.6
1,266,441 - -0.7
1,266,442 - 0.7
1,266,442 + -0.1
1,266,443 + 1.6
1,266,460 - 0.5
1,266,460 - 0.5
1,266,463 + 0.8
1,266,479 + -0.6
1,266,480 + -0.3
1,266,483 - 3.1
1,266,485 - -0.5
1,266,492 + 1.3
1,266,500 + 1.4
1,266,521 - 0.8
1,266,524 - -0.4
1,266,572 - -0.4
1,266,579 + -0.1
1,266,588 + 2.3
1,266,598 + 0.2
1,266,599 + -0.8
1,266,617 + -0.5
1,266,624 - 0.4
1,266,634 + 1.8
1,266,646 - 0.3
1,266,650 - 1.4
1,266,663 + -1.0
1,266,673 - 0.4
1,266,677 - 0.9
1,266,697 + 1.4