Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5699

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5698: 14066 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 714233 to 715636 14066 mRNA_5699: 14067 - HMMPfam-Vault protein inter-alpha-trypsin domain-PF08487,HMMPfam-von Willebrand factor type A domain-PF13768,ProSiteProfiles-VWFA domain profile.-PS50234,ProSiteProfiles-VIT domain profile.-PS51468,SMART-von Willebrand factor (vWF) type A domain-SM00327,SMART-Vault protein Inter-alpha-Trypsin domain-SM00609,SUPERFAMILY--SSF53300, at 716086 to 718925 14067 mRNA_5700: 14068 - KOG0143 Iron/ascorbate family oxidoreductases, at 719283 to 720938 14068

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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715,684 - -0.2
715,920 - 0.0
716,712 - 14067 mRNA_5699 0.22 -0.1
716,783 + 14067 mRNA_5699 0.25 -0.7
717,033 + 14067 mRNA_5699 0.33 0.7
717,382 - 14067 mRNA_5699 0.46 0.4
717,531 + 14067 mRNA_5699 0.51 1.3
717,842 - 14067 mRNA_5699 0.62 1.3
717,941 - 14067 mRNA_5699 0.65 -0.4
717,988 + 14067 mRNA_5699 0.67 0.5
718,116 + 14067 mRNA_5699 0.71 -0.4
718,470 - 14067 mRNA_5699 0.84 -0.8
718,523 - 14067 mRNA_5699 0.86 0.3
718,692 - 2.9
718,943 - 1.1
718,975 - -0.4
718,980 + 1.2
719,018 + 0.2
719,020 - -0.4
719,044 - -0.0
719,050 + -0.2
719,070 + -0.0
719,144 - -0.2
719,177 + 2.5
719,197 + 0.6
719,315 - 0.7
719,359 + -0.3
719,405 - -0.5
719,417 + 0.8
719,437 - -0.5
719,440 - 0.4
719,440 + 0.1
719,450 - 14068 mRNA_5700 0.10 -0.7
719,450 - 14068 mRNA_5700 0.10 0.0
719,490 + 14068 mRNA_5700 0.12 0.1
719,492 - 14068 mRNA_5700 0.13 2.4
719,493 + 14068 mRNA_5700 0.13 -0.1
719,495 - 14068 mRNA_5700 0.13 0.3
719,509 + 14068 mRNA_5700 0.14 0.0
719,520 + 14068 mRNA_5700 0.14 -1.6
719,524 + 14068 mRNA_5700 0.15 1.3
719,531 - 14068 mRNA_5700 0.15 -0.7
719,552 - 14068 mRNA_5700 0.16 -0.1
719,669 - 14068 mRNA_5700 0.23 1.7
719,679 - 14068 mRNA_5700 0.24 -0.5