Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5629

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5628: 13996 - SUPERFAMILY--SSF57997, at 541523 to 547167 13996 mRNA_5629: 13997 - K15430 TRM11, TRMT11 tRNA (guanine10-N2)-methyltransferase, at 547536 to 549644 13997 mRNA_5630: 13998 - HMMPfam-SUR7/PalI family-PF06687, at 549852 to 551893 13998

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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546,586 - 13996 mRNA_5628 0.90 0.8
546,588 + 13996 mRNA_5628 0.90 1.4
546,603 + 0.9
546,737 - 0.7
546,885 + 0.4
546,985 - 0.5
547,313 + 2.5
547,328 - -0.2
547,340 + 1.3
547,379 + 1.2
547,464 - -0.5
547,473 - -0.4
547,476 - -0.7
547,478 + 0.0
547,521 - 1.1
547,627 - -0.2
547,787 - 13997 mRNA_5629 0.12 0.3
547,909 + 13997 mRNA_5629 0.18 -0.0
547,918 - 13997 mRNA_5629 0.18 3.0
548,058 - 13997 mRNA_5629 0.25 -0.2
548,090 + 13997 mRNA_5629 0.26 0.1
548,109 - 13997 mRNA_5629 0.27 -0.1
548,238 - 13997 mRNA_5629 0.33 1.4
548,503 + 13997 mRNA_5629 0.46 1.2
549,048 - 13997 mRNA_5629 0.72 -0.5
549,065 + 13997 mRNA_5629 0.72 0.1
549,100 + 13997 mRNA_5629 0.74 2.7
549,528 - 0.8
549,601 + 3.2
549,794 - -0.7
549,797 + 0.7
549,818 - 0.4
549,923 - -0.1
549,988 + -0.3
550,085 + 13998 mRNA_5630 0.11 0.4
550,092 + 13998 mRNA_5630 0.12 0.1
550,273 + 13998 mRNA_5630 0.21 1.0
550,624 - 13998 mRNA_5630 0.38 -1.5
550,639 + 13998 mRNA_5630 0.39 0.9