Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5593

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5592: 13960 - HMMPfam-Alcohol acetyltransferase-PF07247,SUPERFAMILY--SSF52777, at 461599 to 463064 13960 mRNA_5593: 13961 - K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase, at 463128 to 464888 13961 mRNA_5594: 13962 - K07943 ARL2 ADP-ribosylation factor-like protein 2, at 465150 to 466141 13962

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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462,286 - 13960 mRNA_5592 0.47 -0.6
462,330 + 13960 mRNA_5592 0.50 1.5
462,577 - 13960 mRNA_5592 0.67 2.4
462,587 - 13960 mRNA_5592 0.67 1.3
463,027 + 1.2
463,145 - -0.1
463,458 - 13961 mRNA_5593 0.19 -0.3
463,588 + 13961 mRNA_5593 0.26 0.2
463,597 + 13961 mRNA_5593 0.27 -3.2
463,734 - 13961 mRNA_5593 0.34 0.2
463,875 + 13961 mRNA_5593 0.42 -0.6
464,044 - 13961 mRNA_5593 0.52 0.1
464,061 + 13961 mRNA_5593 0.53 0.7
464,184 + 13961 mRNA_5593 0.60 -2.6
464,274 + 13961 mRNA_5593 0.65 1.0
464,286 + 13961 mRNA_5593 0.66 0.6
464,289 - 13961 mRNA_5593 0.66 0.7
464,345 - 13961 mRNA_5593 0.69 -0.6
464,609 + 13961 mRNA_5593 0.84 0.8
464,645 + 13961 mRNA_5593 0.86 -0.2
464,779 - -2.4
464,800 + 0.2
464,898 + 1.1
464,917 - 1.8
464,925 + 0.3
464,926 + 2.0
464,928 + 1.5
464,931 - 1.0
464,935 - 2.0
464,952 - 1.0
465,074 - -0.0
465,084 + -0.3
465,087 + 2.4
465,098 + 0.4
465,217 + -0.1
465,232 + 0.2