Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5579

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5579: 13947 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 422272 to 423518 13947 mRNA_5580: 13948 - K00162 PDHB, pdhB pyruvate dehydrogenase E1 component beta subunit, at 424310 to 425729 13948

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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421,329 + 0.7
421,353 - -2.6
421,468 - 0.8
421,473 + -0.0
421,483 - 0.5
421,484 - -0.3
421,486 - 0.5
421,489 - -0.3
421,489 + -0.1
421,503 + 1.0
421,508 + -0.2
421,523 - 0.7
421,525 - 0.5
421,530 + -0.0
421,530 + 1.6
421,636 + 1.6
421,663 - 0.2
421,822 - 0.5
421,826 + -0.2
421,834 + 1.2
421,845 + -1.2
422,146 + 0.4
422,525 - 13947 mRNA_5579 0.20 2.7
422,606 + 13947 mRNA_5579 0.27 1.8
422,825 - 13947 mRNA_5579 0.44 -0.5
422,870 + 13947 mRNA_5579 0.48 0.7
422,994 - 13947 mRNA_5579 0.58 0.1
423,020 + 13947 mRNA_5579 0.60 0.1
423,152 + 13947 mRNA_5579 0.71 0.4
423,433 + 2.3
423,433 + 0.3
423,474 - 2.6
423,475 - 0.7
423,634 + 0.5
423,741 - -1.2
423,761 + 0.1
423,761 + 2.1
423,771 + 0.3