Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5500

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5499: 13867 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 240567 to 242106 13867 mRNA_5500: 13868 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,ProSiteProfiles-MATH/TRAF domain profile.-PS50144,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF54695, at 242489 to 245110 13868 mRNA_5501: 13869 - Hypothetical Protein, at 245382 to 247759 13869

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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242,007 + 0.6
242,009 + -0.6
242,120 + 0.6
242,144 - -0.2
242,160 + 1.4
242,181 - 0.3
242,193 + -0.6
242,467 - 1.4
242,470 + -0.2
242,483 - 0.1
242,719 + -1.1
242,736 + 1.4
242,760 - 13868 mRNA_5500 0.10 0.6
242,800 - 13868 mRNA_5500 0.12 0.2
242,899 - 13868 mRNA_5500 0.16 -0.2
243,050 + 13868 mRNA_5500 0.21 -0.3
243,117 + 13868 mRNA_5500 0.24 0.2
243,217 - 13868 mRNA_5500 0.28 -1.2
243,477 + 13868 mRNA_5500 0.38 -0.7
243,709 - 13868 mRNA_5500 0.47 -0.6
243,837 + 13868 mRNA_5500 0.51 1.0
243,841 - 13868 mRNA_5500 0.52 0.9
243,857 - 13868 mRNA_5500 0.52 0.6
243,993 - 13868 mRNA_5500 0.57 -0.9
244,300 + 13868 mRNA_5500 0.69 0.7
245,091 + 0.6
245,115 + -0.8
245,379 - 0.8
245,406 - -0.9
245,720 + 13869 mRNA_5501 0.14 0.9