Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5499

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5498: 13866 - Hypothetical Protein, at 238766 to 240187 13866 mRNA_5499: 13867 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 240567 to 242106 13867 mRNA_5500: 13868 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,ProSiteProfiles-MATH/TRAF domain profile.-PS50144,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF54695, at 242489 to 245110 13868

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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239,671 - 13866 mRNA_5498 0.64 2.1
239,783 - 13866 mRNA_5498 0.72 1.3
239,816 + 13866 mRNA_5498 0.74 -1.0
240,374 - -0.4
240,553 + -1.7
240,773 + 13867 mRNA_5499 0.13 1.9
241,007 - 13867 mRNA_5499 0.29 0.6
241,108 + 13867 mRNA_5499 0.35 0.3
241,355 - 13867 mRNA_5499 0.51 0.8
242,007 + 0.6
242,009 + -0.6
242,120 + 0.6
242,144 - -0.2
242,160 + 1.4
242,181 - 0.3
242,193 + -0.6
242,467 - 1.4
242,470 + -0.2
242,483 - 0.1
242,719 + -1.1
242,736 + 1.4
242,760 - 13868 mRNA_5500 0.10 0.6
242,800 - 13868 mRNA_5500 0.12 0.2
242,899 - 13868 mRNA_5500 0.16 -0.2
243,050 + 13868 mRNA_5500 0.21 -0.3