Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5458

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5457: 13825 - KOG2533 Permease of the major facilitator superfamily, at 132935 to 135021 13825 mRNA_5458: 13826 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 135775 to 137466 13826 mRNA_5459: 13827 - K11274 WDHD1, CTF4 chromosome transmission fidelity protein 4, at 137712 to 142307 13827

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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134,846 + -0.3
134,958 - 1.7
134,994 - -0.2
134,994 + 0.7
135,005 - 1.2
135,112 - 0.7
135,133 - 0.1
135,133 - -0.8
135,142 + 0.8
135,152 - 1.6
135,155 + 1.5
135,160 + 1.0
135,165 + -0.3
135,192 - -0.4
135,210 + 1.7
135,228 - -2.1
135,238 - 0.9
135,271 - 1.5
135,284 + 0.6
135,285 - -0.2
135,287 + -0.7
135,290 - 0.1
135,299 - 0.8
135,310 - 0.3
135,319 + -0.7
135,319 + 0.5
135,327 - 1.1
135,354 - -0.5
135,446 - 0.3
135,446 - 0.4
135,464 + 0.6
135,464 + -0.1
135,485 - 0.3
135,486 - 0.6
135,486 - -0.1
135,489 + 0.6
135,493 + -0.4
135,506 + -0.1
135,510 + 0.3
135,511 + 1.0
135,560 - 1.4
135,560 - 0.2
135,570 + 0.5
135,571 - 0.3
135,577 - 0.3
135,580 + 0.3
135,581 + -2.0
135,586 + 1.0
135,586 - 1.0
135,607 - 0.1
135,616 + 0.7
135,627 + 2.2
135,632 - -0.3
135,647 - 0.3
135,654 + -0.8
135,656 + 0.7
135,682 - 0.6
135,688 + 0.4
135,724 + 1.4
135,728 + -0.6
135,818 - -0.5
135,825 - -0.0
135,864 - -0.2
135,929 - -1.6
135,944 - 1.4
135,985 + 13826 mRNA_5458 0.12 0.6
135,990 - 13826 mRNA_5458 0.13 1.2
136,025 - 13826 mRNA_5458 0.15 0.9
136,138 + 13826 mRNA_5458 0.21 0.6
136,173 - 13826 mRNA_5458 0.24 0.5
136,190 + 13826 mRNA_5458 0.25 0.7
137,584 + 0.2
137,642 - -0.1
137,645 + 1.0
137,694 + 0.0
137,719 + 0.2
138,231 + 13827 mRNA_5459 0.11 0.4
138,381 + 13827 mRNA_5459 0.15 -0.3