Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5418

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5417: 13785 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 53998 to 56725 13785 mRNA_5418: 13786 - K01502 E3.5.5.7 aliphatic nitrilase, at 56919 to 58432 13786 mRNA_5419: 13787 - Interpro Cut8, nuclear proteasome tether protein, at 58738 to 60106 13787

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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56,079 + 13785 mRNA_5417 0.76 -0.4
56,363 + 13785 mRNA_5417 0.87 2.4
56,368 + 13785 mRNA_5417 0.87 1.4
56,398 - 13785 mRNA_5417 0.88 -0.1
56,647 + -0.1
56,668 - -0.3
56,684 - -0.8
56,782 - 1.3
56,804 - 1.1
56,813 - -0.1
56,828 - -0.8
56,837 - 1.8
56,852 - 0.2
56,856 + 1.4
56,971 + 0.2
57,071 - 13786 mRNA_5418 0.10 -2.7
57,095 - 13786 mRNA_5418 0.12 1.0
57,114 + 13786 mRNA_5418 0.13 -0.5
57,271 + 13786 mRNA_5418 0.23 -0.7
57,380 - 13786 mRNA_5418 0.30 0.5
57,513 + 13786 mRNA_5418 0.39 -1.3
57,518 - 13786 mRNA_5418 0.40 0.6
57,518 - 13786 mRNA_5418 0.40 0.6
57,531 + 13786 mRNA_5418 0.40 0.3
57,531 + 13786 mRNA_5418 0.40 0.7
57,670 - 13786 mRNA_5418 0.50 -0.7
57,684 - 13786 mRNA_5418 0.51 -0.0
57,702 + 13786 mRNA_5418 0.52 1.6
57,776 + 13786 mRNA_5418 0.57 0.9
57,778 - 13786 mRNA_5418 0.57 1.4
57,948 - 13786 mRNA_5418 0.68 -0.6
58,060 - 13786 mRNA_5418 0.75 -0.2
58,079 - 13786 mRNA_5418 0.77 0.1
58,138 - 13786 mRNA_5418 0.81 1.0
58,166 - 13786 mRNA_5418 0.82 1.1
58,212 - 13786 mRNA_5418 0.85 1.2
58,214 + 13786 mRNA_5418 0.86 1.2
58,395 + 1.7
58,519 - 0.8
58,682 + 3.2
58,816 + 0.3
59,111 + 13787 mRNA_5419 0.27 0.1
59,124 + 13787 mRNA_5419 0.28 1.0
59,195 - 13787 mRNA_5419 0.33 0.6
59,258 - 13787 mRNA_5419 0.38 1.2
59,418 + 13787 mRNA_5419 0.50 0.3
59,424 + 13787 mRNA_5419 0.50 0.4