Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5416

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5416: 13784 - K04496 CTBP C-terminal binding protein, at 52502 to 53852 13784 mRNA_5417: 13785 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 53998 to 56725 13785

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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52,065 + -0.2
52,183 - 2.3
52,213 - -0.0
52,245 - 1.3
52,363 + -0.3
52,366 + -0.1
52,387 + 0.3
52,493 + -0.9
52,812 - 13784 mRNA_5416 0.23 0.3
53,002 + 13784 mRNA_5416 0.37 -1.6
53,163 + 13784 mRNA_5416 0.49 0.3
53,273 + 13784 mRNA_5416 0.57 -1.4
53,347 - 13784 mRNA_5416 0.63 0.3
53,383 - 13784 mRNA_5416 0.65 0.1
53,512 - 13784 mRNA_5416 0.75 0.6
53,551 + 13784 mRNA_5416 0.78 -0.1
53,605 - 13784 mRNA_5416 0.82 -0.5
53,733 - -0.3
54,389 - 13785 mRNA_5417 0.14 1.9
54,442 - 13785 mRNA_5417 0.16 -0.4
54,545 - 13785 mRNA_5417 0.20 1.4
54,748 + 13785 mRNA_5417 0.27 0.3
54,750 + 13785 mRNA_5417 0.28 -0.7
54,756 - 13785 mRNA_5417 0.28 0.8
54,792 - 13785 mRNA_5417 0.29 0.8