Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5400

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5399: 13767 - K07078 K07078 uncharacterized protein, at 11684 to 12574 13767 mRNA_5400: 13768 - K07786 emrY MFS transporter, DHA2 family, multidrug resistance protein, at 13151 to 15531 13768 mRNA_5401: 13769 - HMMPfam-Complex 1 protein (LYR family)-PF05347, at 15776 to 16734 13769

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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12,242 + 13767 mRNA_5399 0.63 2.1
12,364 + 13767 mRNA_5399 0.76 0.5
12,367 - 13767 mRNA_5399 0.77 0.5
12,483 - 13767 mRNA_5399 0.90 -1.1
12,518 + -2.4
12,615 + -1.1
12,815 + 0.8
12,828 + -0.3
13,061 - 1.1
13,121 + -0.1
13,248 + 0.9
13,534 - 13768 mRNA_5400 0.16 1.2
13,562 + 13768 mRNA_5400 0.17 0.3
13,834 - 13768 mRNA_5400 0.29 -0.0
14,177 - 13768 mRNA_5400 0.43 -1.2
14,229 + 13768 mRNA_5400 0.45 0.6
14,297 + 13768 mRNA_5400 0.48 0.6
14,399 - 13768 mRNA_5400 0.52 -0.9
14,421 + 13768 mRNA_5400 0.53 -0.2
14,427 + 13768 mRNA_5400 0.54 1.2
14,427 - 13768 mRNA_5400 0.54 -0.2
14,681 - 13768 mRNA_5400 0.64 1.4
14,790 + 13768 mRNA_5400 0.69 1.7
14,898 + 13768 mRNA_5400 0.73 1.0
15,102 - 13768 mRNA_5400 0.82 1.8
15,148 + 13768 mRNA_5400 0.84 -2.3
15,278 + 13768 mRNA_5400 0.89 -1.4
15,309 + -0.4
15,403 + -0.5
15,419 + -0.9
15,456 + 0.6
15,589 + -0.7
15,592 - 1.6
15,594 - -1.2
15,598 + -2.0
15,598 + 1.6
15,604 - -0.2
15,608 + -0.2
15,611 + 1.6
15,613 - 0.4
15,616 + -0.3
15,617 - -0.3
15,622 + 0.3
15,630 + -1.4
15,642 - -1.0
15,647 - 0.5
15,676 - 1.5
15,680 + 0.3
15,714 + 1.6
15,789 + 0.0
15,834 + 0.1
16,094 + 13769 mRNA_5401 0.33 1.3
16,273 + 13769 mRNA_5401 0.52 1.0
16,357 + 13769 mRNA_5401 0.61 -0.5