Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5398

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5397: 13765 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 6124 to 7635 13765 mRNA_5398: 13766 - K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic), at 8077 to 11128 13766 mRNA_5399: 13767 - K07078 K07078 uncharacterized protein, at 11684 to 12574 13767

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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7,150 + 13765 mRNA_5397 0.68 0.2
7,159 - 13765 mRNA_5397 0.68 -1.6
7,227 - 13765 mRNA_5397 0.73 -0.3
7,269 - 13765 mRNA_5397 0.76 0.2
7,573 + -0.2
7,590 - 2.0
7,604 + 0.1
7,715 - 0.0
7,742 - -0.8
7,748 + 3.5
7,873 + 0.8
7,877 + 0.5
7,959 + 0.9
7,964 - -0.9
7,976 + 0.7
7,978 + 0.6
7,981 - 0.4
7,993 + 1.8
7,998 + -1.0
8,003 - 0.7
8,159 + -1.1
8,169 + 1.3
8,283 + 1.6
8,392 - 13766 mRNA_5398 0.10 0.5
8,423 - 13766 mRNA_5398 0.11 0.9
8,426 + 13766 mRNA_5398 0.11 0.3
8,429 - 13766 mRNA_5398 0.12 0.3
8,439 + 13766 mRNA_5398 0.12 -1.2
8,712 + 13766 mRNA_5398 0.21 0.6
8,719 + 13766 mRNA_5398 0.21 0.4
8,861 - 13766 mRNA_5398 0.26 -0.7
8,867 + 13766 mRNA_5398 0.26 -0.1
9,115 - 13766 mRNA_5398 0.34 -0.5
9,191 + 13766 mRNA_5398 0.37 -0.0
9,291 + 13766 mRNA_5398 0.40 0.1
9,319 - 13766 mRNA_5398 0.41 0.2
9,431 + 13766 mRNA_5398 0.44 -0.9
9,481 + 13766 mRNA_5398 0.46 0.1
9,575 + 13766 mRNA_5398 0.49 0.2
9,590 - 13766 mRNA_5398 0.50 0.5
9,591 + 13766 mRNA_5398 0.50 1.4
9,597 + 13766 mRNA_5398 0.50 0.2
9,624 + 13766 mRNA_5398 0.51 0.2
9,689 - 13766 mRNA_5398 0.53 1.2
9,886 - 13766 mRNA_5398 0.59 1.7
10,141 - 13766 mRNA_5398 0.68 0.1
10,144 + 13766 mRNA_5398 0.68 2.1
10,274 + 13766 mRNA_5398 0.72 -0.1
10,274 + 13766 mRNA_5398 0.72 1.5
10,295 + 13766 mRNA_5398 0.73 1.2
10,322 - 13766 mRNA_5398 0.74 -0.8
10,345 - 13766 mRNA_5398 0.74 -0.1
10,713 - 13766 mRNA_5398 0.86 -0.6
10,749 + 13766 mRNA_5398 0.88 -0.4
10,821 + 13766 mRNA_5398 0.90 -0.6
10,853 + -0.3
10,874 + -0.4
10,879 + 0.4
10,972 - 1.1
10,973 + 0.5
11,196 + 1.1
11,200 - 0.2
11,291 - 0.2
11,429 + 0.8
11,435 - 0.9
11,447 + -0.4
11,451 + -0.3
11,466 - 0.1
11,467 + 1.6
11,467 + 1.9
11,472 + -1.0
11,488 + 2.0
11,496 + 1.8
11,641 + 0.1
11,663 + 0.2
11,679 + 0.5
11,681 - 0.1
11,681 + 0.0
11,793 - 13767 mRNA_5399 0.12 1.4
11,863 - 13767 mRNA_5399 0.20 -0.0
11,937 - 13767 mRNA_5399 0.28 0.6
11,938 - 13767 mRNA_5399 0.29 0.3