Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5396

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1148 to 1997 13763 mRNA_5396: 13764 - KOG4567 GTPase-activating protein, at 2092 to 5786 13764 mRNA_5397: 13765 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 6124 to 7635 13765

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,103 - 0.3
1,110 + 0.6
1,245 - 13763 mRNA_5395 0.11 1.7
1,260 - 13763 mRNA_5395 0.13 -1.1
1,376 - 13763 mRNA_5395 0.27 1.1
1,438 + 13763 mRNA_5395 0.34 0.5
1,438 + 13763 mRNA_5395 0.34 0.6
1,438 + 13763 mRNA_5395 0.34 -0.4
1,523 + 13763 mRNA_5395 0.44 -1.7
1,528 - 13763 mRNA_5395 0.45 -0.8
1,533 + 13763 mRNA_5395 0.45 -0.0
1,538 + 13763 mRNA_5395 0.46 2.3
1,538 - 13763 mRNA_5395 0.46 -0.5
1,556 + 13763 mRNA_5395 0.48 -1.1
1,639 + 13763 mRNA_5395 0.58 0.2
1,854 - 13763 mRNA_5395 0.83 -0.4
1,855 - 13763 mRNA_5395 0.83 -1.0
1,887 - 13763 mRNA_5395 0.87 1.3
1,908 - 13763 mRNA_5395 0.89 1.5
2,000 - 0.1
2,009 + 0.8
2,093 + 0.6
2,125 - 1.0
2,156 - -0.2
2,162 + -0.1
2,397 + 2.8
2,412 + -0.2
2,570 + 13764 mRNA_5396 0.13 -0.2
2,586 + 13764 mRNA_5396 0.13 0.0
2,594 - 13764 mRNA_5396 0.14 1.6
2,597 + 13764 mRNA_5396 0.14 0.3
2,661 + 13764 mRNA_5396 0.15 -0.0
2,773 + 13764 mRNA_5396 0.18 -1.3
2,847 - 13764 mRNA_5396 0.20 1.6
2,895 - 13764 mRNA_5396 0.22 0.3
2,923 + 13764 mRNA_5396 0.22 0.3
3,029 + 13764 mRNA_5396 0.25 -1.9
3,054 + 13764 mRNA_5396 0.26 0.6
3,088 + 13764 mRNA_5396 0.27 0.1
3,167 + 13764 mRNA_5396 0.29 1.2
3,171 + 13764 mRNA_5396 0.29 2.2
3,175 + 13764 mRNA_5396 0.29 0.4
3,216 + 13764 mRNA_5396 0.30 1.8
3,230 + 13764 mRNA_5396 0.31 1.4
3,295 - 13764 mRNA_5396 0.33 0.3
3,301 + 13764 mRNA_5396 0.33 -1.5
3,304 - 13764 mRNA_5396 0.33 1.3
3,319 + 13764 mRNA_5396 0.33 -0.6
3,449 - 13764 mRNA_5396 0.37 2.7
3,457 - 13764 mRNA_5396 0.37 0.3
3,584 + 13764 mRNA_5396 0.40 0.3
3,693 - 13764 mRNA_5396 0.43 -0.9
3,693 - 13764 mRNA_5396 0.43 -1.5
3,699 + 13764 mRNA_5396 0.43 0.0
3,743 + 13764 mRNA_5396 0.45 3.7
3,798 + 13764 mRNA_5396 0.46 2.5
3,857 - 13764 mRNA_5396 0.48 0.8
3,863 - 13764 mRNA_5396 0.48 -0.4
3,870 + 13764 mRNA_5396 0.48 -0.9
3,872 - 13764 mRNA_5396 0.48 0.6
3,875 + 13764 mRNA_5396 0.48 0.1
3,878 + 13764 mRNA_5396 0.48 1.6
3,897 + 13764 mRNA_5396 0.49 0.8
3,927 + 13764 mRNA_5396 0.50 0.2
3,930 - 13764 mRNA_5396 0.50 0.2
4,056 + 13764 mRNA_5396 0.53 1.9
4,164 - 13764 mRNA_5396 0.56 0.8
4,184 - 13764 mRNA_5396 0.57 0.7
4,186 + 13764 mRNA_5396 0.57 1.7
4,191 + 13764 mRNA_5396 0.57 1.4
4,377 - 13764 mRNA_5396 0.62 0.3
4,392 + 13764 mRNA_5396 0.62 1.1
4,465 - 13764 mRNA_5396 0.64 0.5
4,577 - 13764 mRNA_5396 0.67 -0.6
4,656 - 13764 mRNA_5396 0.69 0.4
4,693 + 13764 mRNA_5396 0.70 -0.5
4,707 - 13764 mRNA_5396 0.71 -0.3
4,755 + 13764 mRNA_5396 0.72 -0.0
4,762 + 13764 mRNA_5396 0.72 0.0
4,794 + 13764 mRNA_5396 0.73 1.8
4,888 - 13764 mRNA_5396 0.76 2.6
4,909 - 13764 mRNA_5396 0.76 0.5
4,913 + 13764 mRNA_5396 0.76 -1.7
4,984 + 13764 mRNA_5396 0.78 0.3
5,076 + 13764 mRNA_5396 0.81 -1.4
5,203 - 13764 mRNA_5396 0.84 0.5
5,351 - 13764 mRNA_5396 0.88 0.6
5,370 - 13764 mRNA_5396 0.89 0.8
5,384 - 13764 mRNA_5396 0.89 -1.0
5,504 + 1.0
5,508 + -0.8
5,520 - 0.5
5,614 + -1.2
5,614 + -0.5
5,635 + -0.8
5,647 + 0.5
5,679 + 0.6
5,793 - 0.4
5,794 + 1.2
5,795 - 0.3
5,797 - 0.2
5,801 + 1.0
5,969 + -0.1
5,970 + 0.4
6,077 - 1.0
6,196 + -0.4
6,223 - -0.8
6,240 - -0.9
6,484 + 13765 mRNA_5397 0.24 0.8
6,575 - 13765 mRNA_5397 0.30 -0.1
6,621 + 13765 mRNA_5397 0.33 1.2
6,632 - 13765 mRNA_5397 0.34 0.3
6,685 - 13765 mRNA_5397 0.37 0.6