Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5369

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5368: 13736 - K09553 STIP1 stress-induced-phosphoprotein 1, at 555613 to 556991 13736 mRNA_5369: 13737 - K03627 MBF1 putative transcription factor, at 557510 to 559067 13737 mRNA_5370: 13738 - K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1, at 559592 to 565388 13738

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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556,733 - 13736 mRNA_5368 0.81 0.1
556,859 + -1.2
556,864 + -0.4
556,867 + 0.2
556,963 - -0.9
557,004 + 0.6
557,020 + 1.4
557,140 + -0.8
557,141 - 1.7
557,149 + -0.3
557,272 - 1.1
557,274 + 1.1
557,275 - 0.2
557,276 - -0.7
557,276 - 0.5
557,283 + 0.1
557,288 + -0.6
557,291 - 0.9
557,291 + 2.3
557,293 + -1.2
557,303 - 0.5
557,311 + 0.5
558,692 - 13737 mRNA_5369 0.76 0.1
558,850 - 13737 mRNA_5369 0.86 0.6
558,855 - 13737 mRNA_5369 0.86 -1.2
558,917 + -1.4
559,330 - 0.8