Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5343

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5342: 13710 - KOG0692 Pentafunctional AROM protein, at 496893 to 498783 13710 mRNA_5343: 13711 - K01835 pgm phosphoglucomutase, at 499617 to 502031 13711 mRNA_5344: 13712 - KOG4176 Uncharacterized conserved protein, at 502069 to 503147 13712

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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498,683 + -0.2
498,700 - 2.6
498,926 + 0.0
498,935 - -1.4
498,953 - 0.7
498,980 + -0.0
499,540 + -0.8
499,548 - 0.7
499,556 - 0.0
499,575 - 0.7
499,710 + -0.8
499,721 + 1.5
499,723 + -0.6
499,851 - -1.0
499,858 + -0.7
500,122 + 13711 mRNA_5343 0.21 0.1
500,134 + 13711 mRNA_5343 0.21 -0.3
500,557 + 13711 mRNA_5343 0.39 -0.6
500,560 - 13711 mRNA_5343 0.39 -0.3
500,560 - 13711 mRNA_5343 0.39 -0.7
500,575 + 13711 mRNA_5343 0.40 3.0
500,599 - 13711 mRNA_5343 0.41 -0.6
500,763 - 13711 mRNA_5343 0.47 -1.1
500,868 + 13711 mRNA_5343 0.52 -0.7
500,884 + 13711 mRNA_5343 0.52 0.9
501,011 - 13711 mRNA_5343 0.58 -0.2
501,113 - 13711 mRNA_5343 0.62 0.0
501,574 + 13711 mRNA_5343 0.81 -0.4
501,655 - 13711 mRNA_5343 0.84 0.5
501,716 + 13711 mRNA_5343 0.87 0.6
501,754 - 13711 mRNA_5343 0.88 -0.3
501,759 + 13711 mRNA_5343 0.89 0.5
502,022 + -0.1
502,072 + -0.5
502,203 + 13712 mRNA_5344 0.12 -0.1
502,301 - 13712 mRNA_5344 0.22 0.8
502,302 + 13712 mRNA_5344 0.22 -0.3
502,313 + 13712 mRNA_5344 0.23 1.7
502,448 + 13712 mRNA_5344 0.35 1.5
502,773 - 13712 mRNA_5344 0.65 1.5
502,888 - 13712 mRNA_5344 0.76 3.0
503,028 - 13712 mRNA_5344 0.89 1.2