Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5332

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5331: 13699 - SUPERFAMILY--SSF52047, at 473951 to 475290 13699 mRNA_5332: 13700 - K01904 4CL 4-coumarate--CoA ligase, at 475424 to 477955 13700 mRNA_5333: 13701 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 478191 to 479250 13701

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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474,460 + 13699 mRNA_5331 0.38 -0.8
474,565 - 13699 mRNA_5331 0.46 1.0
474,752 - 13699 mRNA_5331 0.60 -0.6
474,773 + 13699 mRNA_5331 0.61 -0.2
475,027 - 13699 mRNA_5331 0.80 0.1
475,044 + 13699 mRNA_5331 0.82 -0.8
475,166 + 1.4
475,288 - 1.5
475,360 - 0.1
475,363 - 0.1
475,383 + -0.1
475,392 + -1.3
475,399 - 0.6
475,404 + 1.4
475,530 + 1.2
475,546 + 0.7
475,679 - 13700 mRNA_5332 0.10 0.2
476,090 - 13700 mRNA_5332 0.26 1.1
476,133 + 13700 mRNA_5332 0.28 0.0
476,134 - 13700 mRNA_5332 0.28 1.5
476,400 + 13700 mRNA_5332 0.39 0.9
476,411 + 13700 mRNA_5332 0.39 -0.4
476,656 + 13700 mRNA_5332 0.49 0.2
477,115 - 13700 mRNA_5332 0.67 0.7
477,269 - 13700 mRNA_5332 0.73 -1.2
477,299 + 13700 mRNA_5332 0.74 0.8
477,388 + 13700 mRNA_5332 0.78 -1.2
477,431 - 13700 mRNA_5332 0.79 -0.9
477,687 - 13700 mRNA_5332 0.89 1.4
477,945 + -1.1
478,546 - 13701 mRNA_5333 0.33 1.9
478,557 - 13701 mRNA_5333 0.35 -0.8
478,564 + 13701 mRNA_5333 0.35 -1.8
478,870 - 13701 mRNA_5333 0.64 0.1
478,897 - 13701 mRNA_5333 0.67 1.7
478,904 + 13701 mRNA_5333 0.67 2.3