Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5279

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5278: 13646 - KOG1488 Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily), at 341492 to 344533 13646 mRNA_5279: 13647 - KOG2231 Predicted E3 ubiquitin ligase, at 344945 to 347664 13647 mRNA_5280: 13648 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 348551 to 349893 13648

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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344,625 - 0.0
345,398 + 13647 mRNA_5279 0.17 0.6
345,402 + 13647 mRNA_5279 0.17 -0.0
345,512 + 13647 mRNA_5279 0.21 0.6
345,521 - 13647 mRNA_5279 0.21 -0.6
345,549 - 13647 mRNA_5279 0.22 0.1
345,811 - 13647 mRNA_5279 0.32 -0.6
346,032 + 13647 mRNA_5279 0.40 -0.6
346,412 - 13647 mRNA_5279 0.54 1.5
346,675 - 13647 mRNA_5279 0.64 0.6
346,834 - 13647 mRNA_5279 0.69 0.2
347,049 + 13647 mRNA_5279 0.77 -0.2
347,059 + 13647 mRNA_5279 0.78 0.2
347,136 - 13647 mRNA_5279 0.81 0.3
347,187 + 13647 mRNA_5279 0.82 0.5
347,241 - 13647 mRNA_5279 0.84 1.3
347,274 - 13647 mRNA_5279 0.86 -1.0
347,333 - 13647 mRNA_5279 0.88 0.3
347,470 - -1.0
347,729 - 1.0
347,796 + 2.7
347,882 + -1.2
347,904 + 0.5
348,210 - -0.2
348,212 - 0.4
348,312 - 0.0
348,347 + 0.9
348,360 + 1.6
348,384 - -0.7