Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5264

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5263: 13631 - BLAST pyruvate dehydrogenase E1 component subunit alpha [Mi..., at 309267 to 309581 13631 mRNA_5264: 13632 - Hypothetical Protein, at 310145 to 311167 13632 mRNA_5265: 13633 - K18749 LSM14, RAP55, SCD6 protein LSM14, at 311622 to 313606 13633

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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309,159 - -0.6
309,174 - -0.9
309,201 + 1.6
309,298 - 0.1
309,311 - 13631 mRNA_5263 0.14 -0.3
309,440 - 13631 mRNA_5263 0.55 0.2
309,452 + 13631 mRNA_5263 0.59 0.3
309,462 - 13631 mRNA_5263 0.62 1.0
309,768 + 0.3
309,782 + 1.1
309,784 - -0.0
309,855 + -1.6
309,855 - 0.4
309,875 + 0.9
309,881 - 1.8
309,885 - -1.4
309,909 + -0.6
309,920 - -2.5
309,923 - 0.3
309,935 - 0.6
309,948 + -0.1
310,064 - 2.3
310,065 - 0.7
310,072 - -0.9
310,078 + -0.4
310,090 - 0.3
310,218 - -0.7
310,360 - 13632 mRNA_5264 0.21 -0.1
310,392 + 13632 mRNA_5264 0.24 0.4
310,393 - 13632 mRNA_5264 0.24 0.1
310,652 - 13632 mRNA_5264 0.50 0.2
310,979 + 13632 mRNA_5264 0.82 -0.9
311,506 - -0.0
311,523 + -0.4
311,542 - 0.9
311,544 + -0.3
311,680 + 1.1
311,684 - -0.7
311,695 + 0.1
311,819 - -0.0
311,820 - -0.6
311,846 + 13633 mRNA_5265 0.11 -0.0
311,855 + 13633 mRNA_5265 0.12 -0.2
312,021 + 13633 mRNA_5265 0.20 0.6