Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5258

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5257: 13625 - K11887 PAAF1, RPN14 proteasomal ATPase-associated factor 1, at 295850 to 297525 13625 mRNA_5258: 13626 - KOG0538 Glycolate oxidase, at 297725 to 299742 13626 mRNA_5259: 13627 - K01424 E3.5.1.1, ansA, ansB L-asparaginase, at 300162 to 301995 13627

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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296,951 - 13625 mRNA_5257 0.66 1.1
296,975 + 13625 mRNA_5257 0.67 -0.5
297,151 + 13625 mRNA_5257 0.78 -0.4
297,423 + 0.7
297,786 + 0.9
297,834 - -0.8
297,842 + 0.4
297,899 + -0.6
298,098 - 13626 mRNA_5258 0.18 -1.1
298,128 - 13626 mRNA_5258 0.20 -0.4
298,128 - 13626 mRNA_5258 0.20 -0.7
298,239 + 13626 mRNA_5258 0.25 -0.6
298,291 + 13626 mRNA_5258 0.28 1.1
298,575 - 13626 mRNA_5258 0.42 1.2
298,880 - 13626 mRNA_5258 0.57 1.1
298,995 - 13626 mRNA_5258 0.63 1.5
299,330 + 13626 mRNA_5258 0.80 -0.9
299,438 - 13626 mRNA_5258 0.85 -1.1
299,594 + -0.2
299,895 - -0.8
299,921 + -0.0
300,209 + -0.9
300,220 + 0.2
300,237 + -1.4
300,655 - 13627 mRNA_5259 0.27 0.2