Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5253

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5252: 13620 - BLAST LPS-assembly protein LptD [Rhizoctonia solani], at 276429 to 278610 13620 mRNA_5253: 13621 - Hypothetical Protein, at 278991 to 279822 13621 mRNA_5254: 13622 - HMMPfam-10 TM Acyl Transferase domain found in Cas1p-PF07779,HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 280539 to 283748 13622

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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278,541 - 0.0
278,582 - 0.4
278,711 + 1.6
279,552 - 13621 mRNA_5253 0.67 -0.7
279,561 - 13621 mRNA_5253 0.69 -0.1
279,710 - 13621 mRNA_5253 0.86 -0.3
279,710 - 13621 mRNA_5253 0.86 0.5
279,719 + 13621 mRNA_5253 0.88 -1.6
279,839 - 0.5
279,864 + 0.7
279,872 - -0.2
279,886 + 2.1
279,892 + -0.7
279,893 - -0.2
279,971 + -1.2
280,091 + 0.2
280,107 + 1.1
280,131 + -1.0
280,157 + 0.6
280,324 - -0.0
280,492 + 1.1
280,706 + 0.6