Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5244

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5243: 13611 - KOG1601 GATA-4/5/6 transcription factors, at 247199 to 251043 13611 mRNA_5244: 13612 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 251965 to 253364 13612 mRNA_5245: 13613 - KOG2887 Membrane protein involved in ER to Golgi transport, at 253942 to 254889 13613

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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251,028 - -0.2
251,062 - 0.5
251,190 - -0.2
251,197 - 1.3
251,216 - -0.3
251,218 + 0.3
251,225 - 0.6
251,231 + -0.1
251,233 - 2.2
251,241 + -1.4
251,351 + -0.4
251,354 - 0.4
251,356 - -1.6
251,356 - 0.9
251,365 - -0.1
251,366 + 0.4
251,368 + -0.3
251,369 - 0.1
251,372 + 1.7
251,372 - 0.9
251,373 + 1.1
251,375 - -0.5
251,388 + 0.4
251,392 + 0.8
251,397 - 0.1
251,412 - 0.4
251,414 + 0.8
251,421 - -0.3
251,423 - 1.5
251,425 + -0.1
251,528 + 0.1
251,535 + 0.7
251,537 - -0.9
251,553 + -0.3
251,560 - -0.7
251,561 - -1.4
251,681 + 0.1
251,685 + 1.3
251,702 + 0.8
251,719 + 2.0
251,753 + -1.7
251,755 - -0.0
251,810 - 0.5
251,827 - -0.6
251,835 + 0.3
252,107 - 13612 mRNA_5244 0.10 -0.4
252,377 - 13612 mRNA_5244 0.29 0.2
252,441 + 13612 mRNA_5244 0.34 -0.0
253,002 + 13612 mRNA_5244 0.74 -0.7
253,161 - 13612 mRNA_5244 0.85 -0.1
253,414 - 1.6
253,714 - -2.3
253,727 - 0.8
253,749 - 2.0
253,890 + -0.4
254,028 + 0.3