Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5228

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5227: 13595 - K00601 E2.1.2.2 phosphoribosylglycinamide formyltransferase, at 201689 to 202738 13595 mRNA_5228: 13596 - HMMPfam-Mis6-PF07778, at 203109 to 206278 13596 mRNA_5229: 13597 - SUPERFAMILY--SSF51445, at 206396 to 208003 13597

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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202,754 + -0.6
203,081 + 2.5
203,087 + -0.6
203,163 - 0.2
203,200 + 0.8
203,215 - -1.2
203,309 + -0.0
203,492 - 13596 mRNA_5228 0.12 -0.1
203,678 - 13596 mRNA_5228 0.18 1.9
203,791 + 13596 mRNA_5228 0.22 1.7
203,959 - 13596 mRNA_5228 0.27 0.4
203,987 + 13596 mRNA_5228 0.28 -0.3
204,266 + 13596 mRNA_5228 0.36 0.8
204,823 - 13596 mRNA_5228 0.54 -0.2
205,075 - 13596 mRNA_5228 0.62 1.8
205,120 + 13596 mRNA_5228 0.63 0.6
205,261 - 13596 mRNA_5228 0.68 -1.4
205,292 + 13596 mRNA_5228 0.69 1.7
205,429 + 13596 mRNA_5228 0.73 1.1
205,432 - 13596 mRNA_5228 0.73 1.4
205,515 - 13596 mRNA_5228 0.76 1.6
205,523 + 13596 mRNA_5228 0.76 0.3
205,531 + 13596 mRNA_5228 0.76 -0.8
205,782 - 13596 mRNA_5228 0.84 -1.4
205,828 - 13596 mRNA_5228 0.86 1.0
205,876 + 13596 mRNA_5228 0.87 1.0
206,078 - 1.1
206,100 + -0.1
206,135 - 0.3
206,140 + 1.8
206,250 - -0.9
206,252 - 0.4
206,414 - 1.8
206,416 - -0.5
206,716 - 13597 mRNA_5229 0.20 -0.4
206,752 + 13597 mRNA_5229 0.22 1.9
206,755 + 13597 mRNA_5229 0.22 0.1
206,833 - 13597 mRNA_5229 0.27 0.6
206,863 - 13597 mRNA_5229 0.29 -0.1
206,895 + 13597 mRNA_5229 0.31 -0.4
206,983 - 13597 mRNA_5229 0.37 -1.0
207,125 + 13597 mRNA_5229 0.45 0.6
207,167 - 13597 mRNA_5229 0.48 0.0
207,204 + 13597 mRNA_5229 0.50 0.9