Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5216

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5217: 13585 - Hypothetical Protein, at 167751 to 168514 13585 mRNA_5216: 13584 - K04648 DCTN1 dynactin 1, at 169213 to 174465 13584 mRNA_5218: 13586 - HMMPfam-RNA12 protein-PF10443,SUPERFAMILY--SSF52540,SUPERFAMILY--SSF54928, at 174597 to 177713 13586

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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168,417 - 13585 mRNA_5217 0.87 0.3
168,429 - 13585 mRNA_5217 0.89 0.8
168,740 + -0.1
168,816 + 0.7
168,905 - -0.9
168,909 - -0.3
169,361 + -0.5
169,364 - 2.3
169,594 - 2.0
169,627 + -0.2
172,590 + 13584 mRNA_5216 0.64 -0.3
174,502 + -0.0
174,503 - 1.0
174,517 + 0.1
174,560 - 0.1
174,565 + 1.7
174,566 + 0.6
174,577 + -0.4
174,601 - 2.6
174,700 + 0.8
174,734 - 1.4
175,148 - 13586 mRNA_5218 0.18 -0.7
175,286 + 13586 mRNA_5218 0.22 -0.1