Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5213

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5212: 13580 - K00624 E2.3.1.7 carnitine O-acetyltransferase, at 159635 to 162568 13580 mRNA_5213: 13581 - Hypothetical Protein, at 163193 to 164200 13581 mRNA_5214: 13582 - K03845 ALG3 alpha-1,3-mannosyltransferase, at 164395 to 166467 13582

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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162,534 - -0.1
162,659 + -0.4
162,665 - 0.2
162,667 + 2.6
162,673 - 1.3
162,673 + -0.1
162,673 + 0.6
162,684 - -0.6
162,686 + 0.8
162,688 + 0.9
162,690 - 0.6
162,709 - -1.9
162,712 + 0.1
162,713 - -0.4
162,713 - 1.6
162,713 + -0.2
162,716 + -0.5
162,718 + -0.1
162,720 + 1.5
162,742 - -0.1
162,748 + 0.6
162,761 - 0.9
162,779 - 0.3
162,782 - 0.2
162,792 - 0.1
162,806 - -0.6
162,807 - 0.5
162,822 + 0.5
162,835 - -0.5
162,863 + 0.2
162,879 + 1.9
162,981 + 2.0
163,070 - 2.1
163,385 + 13581 mRNA_5213 0.19 1.2
163,453 - 13581 mRNA_5213 0.26 1.5
163,668 + 13581 mRNA_5213 0.47 0.8
163,734 + 13581 mRNA_5213 0.54 0.9
163,948 + 13581 mRNA_5213 0.75 -0.1
163,995 + 13581 mRNA_5213 0.80 0.5
164,058 + 13581 mRNA_5213 0.86 0.7
164,492 - -0.2
164,788 + 13582 mRNA_5214 0.19 1.3
164,857 - 13582 mRNA_5214 0.22 -0.5
164,941 - 13582 mRNA_5214 0.26 -0.1
164,967 - 13582 mRNA_5214 0.28 -0.1
164,995 + 13582 mRNA_5214 0.29 -1.6