Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5166

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5165: 13533 - Hypothetical Protein, at 52326 to 52658 13533 mRNA_5166: 13534 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 53307 to 58220 13534 mRNA_5167: 13535 - Hypothetical Protein, at 58782 to 59470 13535

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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52,359 + -0.6
52,371 - 13533 mRNA_5165 0.14 1.1
52,372 + 13533 mRNA_5165 0.14 1.3
52,438 + 13533 mRNA_5165 0.34 -1.5
52,453 + 13533 mRNA_5165 0.38 1.8
52,460 - 13533 mRNA_5165 0.40 0.5
52,486 - 13533 mRNA_5165 0.48 -0.5
52,507 - 13533 mRNA_5165 0.54 0.4
52,510 - 13533 mRNA_5165 0.55 -0.2
52,510 - 13533 mRNA_5165 0.55 0.7
52,517 + 13533 mRNA_5165 0.57 -0.4
52,520 + 13533 mRNA_5165 0.58 -1.8
52,522 + 13533 mRNA_5165 0.59 -0.9
52,523 + 13533 mRNA_5165 0.59 0.9
52,524 - 13533 mRNA_5165 0.59 -0.1
52,528 + 13533 mRNA_5165 0.61 0.2
52,530 - 13533 mRNA_5165 0.61 0.2
52,536 + 13533 mRNA_5165 0.63 0.2
52,536 - 13533 mRNA_5165 0.63 1.7
52,538 - 13533 mRNA_5165 0.64 0.5
52,542 + 13533 mRNA_5165 0.65 0.0
52,543 + 13533 mRNA_5165 0.65 1.9
52,560 + 13533 mRNA_5165 0.70 1.4
52,560 + 13533 mRNA_5165 0.70 2.1
52,561 + 13533 mRNA_5165 0.71 0.6
52,567 - 13533 mRNA_5165 0.72 -0.8
52,574 - 13533 mRNA_5165 0.74 1.6
52,577 + 13533 mRNA_5165 0.75 0.4
52,581 - 13533 mRNA_5165 0.77 0.7
52,582 + 13533 mRNA_5165 0.77 0.7
52,583 - 13533 mRNA_5165 0.77 0.7
52,584 + 13533 mRNA_5165 0.77 -1.2
52,586 + 13533 mRNA_5165 0.78 -0.4
52,596 - 13533 mRNA_5165 0.81 -1.1
52,603 - 13533 mRNA_5165 0.83 1.6
52,648 - -0.4
52,814 + -0.0
52,957 - 0.2
53,154 + 0.5
53,936 + 13534 mRNA_5166 0.13 1.6
54,087 + 13534 mRNA_5166 0.16 0.6
54,171 + 13534 mRNA_5166 0.18 0.1
54,289 - 13534 mRNA_5166 0.20 1.6
54,615 - 13534 mRNA_5166 0.27 1.2
54,694 - 13534 mRNA_5166 0.28 1.7
54,703 + 13534 mRNA_5166 0.28 1.1
55,015 + 13534 mRNA_5166 0.35 1.0
55,358 - 13534 mRNA_5166 0.42 1.6
55,381 + 13534 mRNA_5166 0.42 1.1
55,454 - 13534 mRNA_5166 0.44 0.6
55,488 - 13534 mRNA_5166 0.44 -0.6
55,551 - 13534 mRNA_5166 0.46 1.7
55,610 - 13534 mRNA_5166 0.47 2.3
55,699 + 13534 mRNA_5166 0.49 0.4
55,755 - 13534 mRNA_5166 0.50 -0.8
55,818 - 13534 mRNA_5166 0.51 1.3
56,002 - 13534 mRNA_5166 0.55 0.1
56,206 + 13534 mRNA_5166 0.59 0.4
56,276 + 13534 mRNA_5166 0.60 0.8
56,329 + 13534 mRNA_5166 0.61 1.5
56,522 + 13534 mRNA_5166 0.65 -0.2
56,566 - 13534 mRNA_5166 0.66 0.6
57,009 + 13534 mRNA_5166 0.75 0.5
57,441 - 13534 mRNA_5166 0.84 0.6
57,607 + 13534 mRNA_5166 0.88 0.2
57,706 + 13534 mRNA_5166 0.90 1.4
57,707 - 13534 mRNA_5166 0.90 1.9
57,858 - -0.1
57,867 + 0.4
57,896 + -0.2
58,295 - 0.2
58,464 + 0.0
58,586 - 1.1
58,589 - -0.4
58,613 - -1.8
58,633 - 0.6
58,734 + 0.5
59,032 - 13535 mRNA_5167 0.36 0.1
59,174 + 13535 mRNA_5167 0.57 1.0
59,187 + 13535 mRNA_5167 0.59 -0.2
59,189 + 13535 mRNA_5167 0.59 -1.1