Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5157

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5156: 13524 - K00108 betA, CHDH choline dehydrogenase, at 32964 to 35897 13524 mRNA_5157: 13525 - K11976 RNF216 TRIAD3 E3 ubiquitin-protein ligase RNF216, at 36318 to 38711 13525 mRNA_5158: 13526 - K15128 MED6 mediator of RNA polymerase II transcription subunit 6, at 39677 to 40567 13526

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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35,406 - 13524 mRNA_5156 0.83 0.5
35,499 - 13524 mRNA_5156 0.86 0.4
35,517 + 13524 mRNA_5156 0.87 -0.0
35,667 - -0.4
35,828 - 0.5
35,836 + -0.2
35,981 - -1.5
36,100 + 1.3
36,103 - -0.9
36,108 + 0.8
36,154 - -0.4
36,161 + 2.0
36,296 + 1.1
36,535 - 1.1
36,535 - -0.5
36,579 - 13525 mRNA_5157 0.11 0.1
36,585 + 13525 mRNA_5157 0.11 -0.5
36,662 + 13525 mRNA_5157 0.14 0.6
36,693 + 13525 mRNA_5157 0.16 -0.7
36,834 + 13525 mRNA_5157 0.22 1.9
36,847 + 13525 mRNA_5157 0.22 0.6
37,305 - 13525 mRNA_5157 0.41 -0.3
37,305 + 13525 mRNA_5157 0.41 -1.6
37,416 + 13525 mRNA_5157 0.46 0.4
37,476 + 13525 mRNA_5157 0.48 0.6
37,495 - 13525 mRNA_5157 0.49 -0.6
37,580 - 13525 mRNA_5157 0.53 0.7
37,746 - 13525 mRNA_5157 0.60 2.5
37,785 + 13525 mRNA_5157 0.61 0.2
37,843 - 13525 mRNA_5157 0.64 1.6
37,849 - 13525 mRNA_5157 0.64 -0.4
38,061 - 13525 mRNA_5157 0.73 -1.8
38,068 + 13525 mRNA_5157 0.73 -0.4
38,383 + 13525 mRNA_5157 0.86 0.8
38,778 + -0.1
39,193 - 3.5
39,203 + 1.0
39,350 - 1.9
39,482 + 1.0
39,521 + -0.9