Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5105

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5104: 13472 - Hypothetical Protein, at 1764284 to 1764496 13472 mRNA_5105: 13473 - HMMPfam-Frequency clock protein-PF09421, at 1765221 to 1768687 13473 mRNA_5106: 13474 - K12819 SLU7 pre-mRNA-processing factor SLU7, at 1769315 to 1772134 13474

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,764,383 + 13472 mRNA_5104 0.46 0.4
1,764,785 + 1.8
1,764,955 - -0.8
1,764,962 - 0.8
1,765,038 + 1.7
1,765,079 + -0.4
1,765,087 + 1.3
1,765,095 - 2.1
1,765,101 - 2.5
1,765,134 - 1.8
1,765,146 + 0.4
1,765,251 + 0.1
1,765,279 + 0.4
1,765,397 + 0.4
1,765,515 + 0.8
1,765,853 - 13473 mRNA_5105 0.18 -0.5
1,766,152 + 13473 mRNA_5105 0.27 -1.0
1,766,248 + 13473 mRNA_5105 0.30 0.4
1,766,298 + 13473 mRNA_5105 0.31 1.4
1,766,402 + 13473 mRNA_5105 0.34 -0.1
1,766,411 + 13473 mRNA_5105 0.34 -0.3
1,766,704 + 13473 mRNA_5105 0.43 -0.0
1,766,712 + 13473 mRNA_5105 0.43 1.2
1,767,562 + 13473 mRNA_5105 0.68 -0.3
1,767,718 + 13473 mRNA_5105 0.72 1.8
1,767,862 + 13473 mRNA_5105 0.76 0.2
1,768,107 + 13473 mRNA_5105 0.83 1.5
1,768,288 + 13473 mRNA_5105 0.88 0.9
1,768,422 - -0.1
1,768,433 - -0.2
1,768,433 + -0.5
1,768,445 - 1.3
1,768,448 + 2.0
1,768,450 + 0.1
1,768,551 + -0.1
1,768,570 - 0.9
1,768,576 - 0.3
1,768,585 - 1.7
1,768,590 + -2.1
1,768,599 + 0.1
1,768,616 - 1.7
1,768,626 + -0.1
1,768,632 + 0.2
1,768,676 - -0.2
1,768,678 - 1.9
1,768,742 - -1.0
1,768,745 + -0.7
1,768,753 - -2.0
1,768,755 - 0.8
1,768,763 + 0.6
1,768,769 + -0.4
1,768,775 - 0.5
1,768,780 - 0.4
1,768,792 + 1.7
1,768,793 + 1.4
1,768,797 - 0.3
1,768,798 - 1.8
1,768,800 + 0.9
1,768,802 - 0.7
1,768,806 + -1.2
1,768,813 - -0.5
1,768,813 - 0.5
1,768,817 - 2.5
1,768,883 - -0.3
1,768,894 - 0.1
1,768,915 - 0.6
1,768,915 - 0.8
1,768,928 - 0.3
1,768,931 + 0.2
1,768,935 - 0.3
1,768,935 + 1.5
1,768,937 + 0.1
1,768,944 + -1.0
1,768,945 - -1.2
1,768,947 - 1.7
1,768,952 - 0.0
1,768,963 - -0.2
1,768,964 + 0.1
1,768,984 - -0.2
1,769,008 + -0.5
1,769,009 - 0.7
1,769,014 - 1.0
1,769,015 - 1.2
1,769,020 + -0.5
1,769,021 + 0.4
1,769,039 + 0.0
1,769,045 + -0.8
1,769,046 - 1.9
1,769,050 + -0.1
1,769,052 + 2.3
1,769,054 + 0.4
1,769,063 + -1.1
1,769,065 - -1.7
1,769,070 - 2.6
1,769,100 + -0.1
1,769,147 + -0.6
1,769,150 - 1.8
1,769,164 - -0.1
1,769,170 + 1.4
1,769,196 - 1.2
1,769,197 + -0.9
1,769,198 + 0.9
1,769,201 - 1.5
1,769,205 - -0.2
1,769,212 + 0.7
1,769,218 + 0.8
1,769,225 - -1.2
1,769,257 + 0.4
1,769,262 - 1.0
1,769,265 - 2.3
1,769,272 - 1.3
1,769,275 + 0.6
1,769,275 - 0.6
1,769,275 + -0.1
1,769,276 + -0.3
1,769,276 + -0.7
1,769,283 + 1.4
1,769,295 - 1.6
1,769,301 + 0.2
1,769,301 + 0.3
1,769,301 + 0.7
1,769,326 - 1.6
1,769,333 - 1.5
1,769,338 - 0.5
1,769,338 + 2.0
1,769,339 - -0.5
1,769,345 - 0.6
1,769,355 - 2.3
1,769,356 - 0.5
1,769,362 - -1.6
1,769,365 - 0.3
1,769,366 + -0.4
1,769,406 - 0.6
1,769,452 - -1.8
1,769,470 - 0.3
1,769,488 - 0.9
1,769,488 - 0.7
1,769,490 - -1.1
1,769,500 - 0.8
1,769,509 - 0.8
1,769,529 - 0.7
1,769,548 - 0.7
1,769,551 - -0.2
1,769,558 + 0.2
1,769,572 - 2.8
1,769,575 - 0.8
1,769,576 - 0.2
1,769,580 - -0.5
1,769,591 + -0.1
1,769,591 + -0.9
1,769,619 - 13474 mRNA_5106 0.11 -0.2
1,769,624 - 13474 mRNA_5106 0.11 1.5
1,769,626 - 13474 mRNA_5106 0.11 0.1
1,769,653 + 13474 mRNA_5106 0.12 -0.5
1,769,659 + 13474 mRNA_5106 0.12 -0.8
1,769,660 - 13474 mRNA_5106 0.12 0.7
1,769,661 + 13474 mRNA_5106 0.12 0.2
1,769,667 - 13474 mRNA_5106 0.12 -1.1
1,769,675 + 13474 mRNA_5106 0.13 1.8
1,769,679 - 13474 mRNA_5106 0.13 -0.2
1,769,687 + 13474 mRNA_5106 0.13 1.1