Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5101

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5100: 13468 - Hypothetical Protein, at 1750173 to 1750911 13468 mRNA_5101: 13469 - K12669 OST3, OST6 oligosaccharyltransferase complex subunit gamma, at 1751358 to 1752700 13469 mRNA_5102: 13470 - KOG0619 FOG Leucine rich repeat, at 1753629 to 1757881 13470

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,750,435 + 13468 mRNA_5100 0.35 1.6
1,750,517 + 13468 mRNA_5100 0.47 -0.0
1,750,570 + 13468 mRNA_5100 0.54 1.5
1,750,627 - 13468 mRNA_5100 0.61 0.2
1,750,703 + 13468 mRNA_5100 0.72 -1.1
1,750,796 - 13468 mRNA_5100 0.84 0.2
1,750,919 - 0.5
1,750,941 - 1.2
1,750,963 - -0.5
1,751,000 + -0.8
1,751,001 + -0.8
1,751,002 - 0.3
1,751,003 + 0.7
1,751,003 + -0.5
1,751,004 - 1.2
1,751,029 + 0.4
1,751,048 + 0.0
1,751,084 - -0.1
1,751,088 + 1.6
1,751,127 - 0.9
1,751,128 + -0.2
1,751,134 - -0.3
1,751,139 - -0.1
1,751,173 + 0.5
1,751,218 + 0.9
1,751,285 + 0.5
1,751,299 - 1.0
1,751,312 - 0.3
1,751,316 + -1.0
1,751,335 + 0.6
1,751,343 + 2.9
1,751,343 + -0.8
1,751,636 - 13469 mRNA_5101 0.21 -0.4
1,751,785 - 13469 mRNA_5101 0.32 0.2
1,751,933 + 13469 mRNA_5101 0.43 1.1
1,753,066 + 0.4
1,753,066 - -0.8
1,753,099 + 0.8
1,753,226 + 1.1
1,753,239 + 0.6
1,753,369 - 0.6
1,753,373 + 3.0
1,753,397 + 1.0
1,753,403 + 0.3
1,753,412 + 1.0
1,753,503 - 0.7