Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5097

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5096: 13464 - K11292 SUPT6H, SPT6 transcription elongation factor SPT6, at 1740048 to 1744775 13464 mRNA_5097: 13465 - Hypothetical Protein, at 1745073 to 1746754 13465 mRNA_5098: 13466 - K08065 NFYB nuclear transcription Y subunit beta, at 1747637 to 1748369 13466

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,744,771 + 1.0
1,744,969 + 0.0
1,745,378 - 13465 mRNA_5097 0.18 0.6
1,745,677 - 13465 mRNA_5097 0.36 1.9
1,745,678 + 13465 mRNA_5097 0.36 -0.7
1,745,812 - 13465 mRNA_5097 0.44 0.9
1,745,922 - 13465 mRNA_5097 0.50 0.1
1,746,048 + 13465 mRNA_5097 0.58 -0.5
1,746,133 + 13465 mRNA_5097 0.63 -0.3
1,746,253 + 13465 mRNA_5097 0.70 0.4
1,746,257 + 13465 mRNA_5097 0.70 0.5
1,746,537 + 13465 mRNA_5097 0.87 -0.4
1,746,573 - 13465 mRNA_5097 0.89 -1.9
1,746,987 - 2.0
1,746,989 - -0.3
1,746,996 + -0.2
1,747,019 + 0.8
1,747,023 + -0.1
1,747,079 - 0.1
1,747,109 + -1.2
1,747,137 - 2.2
1,747,137 - 0.0
1,747,139 + 0.4
1,747,144 + 2.5
1,747,150 - -0.1
1,747,162 - -0.1
1,747,163 - 0.6
1,747,165 + -0.5
1,747,166 - 0.4
1,747,168 + 0.7
1,747,180 + 0.1
1,747,181 + 0.2
1,747,192 - 2.4
1,747,221 - -0.2
1,747,221 + -0.5
1,747,237 + 0.1
1,747,286 - 1.0
1,747,307 + 0.1
1,747,308 - 0.5
1,747,309 + 0.3
1,747,317 + -0.2
1,747,318 + 2.8
1,747,327 - 0.6
1,747,327 - 0.6
1,747,333 - 3.1
1,747,476 - 0.7