Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5040

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5039: 13407 - Hypothetical Protein, at 1614263 to 1614994 13407 mRNA_5040: 13408 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 1615086 to 1617129 13408 mRNA_5041: 13409 - K01077 E3.1.3.1, phoA, phoB alkaline phosphatase, at 1617376 to 1619999 13409

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,614,334 + 1.4
1,614,348 + 13407 mRNA_5039 0.12 1.3
1,614,635 - 13407 mRNA_5039 0.51 0.1
1,614,716 + 13407 mRNA_5039 0.62 0.4
1,614,751 - 13407 mRNA_5039 0.67 0.9
1,614,763 - 13407 mRNA_5039 0.68 0.6
1,615,662 + 13408 mRNA_5040 0.28 2.3
1,615,665 - 13408 mRNA_5040 0.28 1.5
1,615,796 - 13408 mRNA_5040 0.35 0.4
1,616,275 - 13408 mRNA_5040 0.58 0.6
1,616,385 - 13408 mRNA_5040 0.64 1.8
1,616,436 + 13408 mRNA_5040 0.66 -0.2
1,616,707 - 13408 mRNA_5040 0.79 -0.7
1,616,880 - 13408 mRNA_5040 0.88 0.1
1,616,988 + 1.4
1,616,997 + -1.3
1,617,139 - 1.7
1,617,139 - -0.3
1,617,139 - 0.7
1,617,165 - 0.8
1,617,293 + -0.3
1,617,299 - -0.0
1,617,305 + 0.1
1,617,313 + 0.1
1,617,314 - -0.2
1,617,327 + -0.1
1,617,333 - -0.3
1,617,334 + -0.3
1,617,438 + 0.4
1,617,474 - -0.5
1,617,600 - 0.5
1,617,641 - 13409 mRNA_5041 0.10 2.1
1,617,718 + 13409 mRNA_5041 0.13 0.8
1,617,753 - 13409 mRNA_5041 0.14 1.0
1,617,822 + 13409 mRNA_5041 0.17 0.3
1,617,900 - 13409 mRNA_5041 0.20 -0.2
1,617,904 - 13409 mRNA_5041 0.20 1.3
1,618,058 + 13409 mRNA_5041 0.26 0.6