Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5029

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5028: 13396 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 1588413 to 1590373 13396 mRNA_5029: 13397 - HMMPfam-Ornithine decarboxylase antizyme-PF02100,SUPERFAMILY--SSF55729, at 1591057 to 1592630 13397 mRNA_5030: 13398 - K01889 FARSA, pheS phenylalanyl-tRNA synthetase alpha chain, at 1592734 to 1594516 13398

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,590,185 + 0.3
1,590,630 - -0.2
1,590,767 - -0.2
1,590,958 - 1.8
1,591,216 + 13397 mRNA_5029 0.10 0.2
1,591,398 + 13397 mRNA_5029 0.22 -0.3
1,591,645 - 13397 mRNA_5029 0.37 1.9
1,591,783 - 13397 mRNA_5029 0.46 0.8
1,591,797 - 13397 mRNA_5029 0.47 0.8
1,591,802 + 13397 mRNA_5029 0.47 2.6
1,591,803 - 13397 mRNA_5029 0.47 -0.8
1,591,811 + 13397 mRNA_5029 0.48 1.1
1,591,931 - 13397 mRNA_5029 0.56 0.6
1,591,954 + 13397 mRNA_5029 0.57 -0.7
1,592,064 - 13397 mRNA_5029 0.64 -0.7
1,592,080 - 13397 mRNA_5029 0.65 0.0
1,592,086 - 13397 mRNA_5029 0.65 1.1
1,592,098 + 13397 mRNA_5029 0.66 -0.0
1,592,099 + 13397 mRNA_5029 0.66 1.0
1,592,104 + 13397 mRNA_5029 0.67 0.9
1,592,110 - 13397 mRNA_5029 0.67 1.1
1,592,113 - 13397 mRNA_5029 0.67 -0.5
1,592,114 - 13397 mRNA_5029 0.67 -0.2
1,592,122 - 13397 mRNA_5029 0.68 1.8
1,592,234 - 13397 mRNA_5029 0.75 1.5
1,592,236 - 13397 mRNA_5029 0.75 -0.1
1,592,253 + 13397 mRNA_5029 0.76 0.9
1,592,253 - 13397 mRNA_5029 0.76 0.5
1,592,259 - 13397 mRNA_5029 0.76 -0.4
1,592,259 - 13397 mRNA_5029 0.76 1.2
1,592,261 - 13397 mRNA_5029 0.76 0.7
1,592,262 + 13397 mRNA_5029 0.77 0.6
1,592,392 - 13397 mRNA_5029 0.85 -0.4
1,592,393 + 13397 mRNA_5029 0.85 -1.0
1,592,401 + 13397 mRNA_5029 0.85 2.4
1,592,407 + 13397 mRNA_5029 0.86 2.0
1,592,409 - 13397 mRNA_5029 0.86 1.2
1,592,410 - 13397 mRNA_5029 0.86 0.2
1,592,410 - 13397 mRNA_5029 0.86 -0.1
1,592,412 - 13397 mRNA_5029 0.86 0.7
1,592,556 - 2.2
1,592,557 - 0.2
1,592,566 - 2.8
1,592,578 - -0.4
1,592,680 - 0.4
1,592,695 - -0.4
1,592,697 + 0.7
1,592,709 - -0.6
1,592,716 - 0.7
1,592,718 - 1.4
1,592,727 + -0.2
1,592,732 + -0.3