Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4930

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4929: 13297 - K01956 carA, CPA1 carbamoyl-phosphate synthase small subunit, at 1340791 to 1342395 13297 mRNA_4930: 13298 - HMMPfam-Ubiquitin family-PF00240,HMMPfam-BAG domain-PF02179,ProSiteProfiles-Ubiquitin domain profile.-PS50053,ProSiteProfiles-BAG domain profile.-PS51035,SMART-BAG domains, present in regulator of Hsp70 proteins-SM00264,SUPERFAMILY--SSF54236,SUPERFAMILY--SSF63491, at 1342722 to 1344500 13298 mRNA_4931: 13299 - ProSiteProfiles-BTB domain profile.-PS50097, at 1344834 to 1346285 13299

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,341,922 - 13297 mRNA_4929 0.70 -0.8
1,341,926 + 13297 mRNA_4929 0.71 -0.8
1,342,181 + 13297 mRNA_4929 0.87 -3.1
1,342,247 + -0.7
1,342,359 - -3.2
1,342,492 - 0.6
1,342,494 - 0.2
1,342,494 - -2.8
1,342,498 - -2.6
1,342,511 + -2.8
1,342,624 + -0.3
1,342,651 - -1.0
1,342,655 + -0.1
1,342,662 - 0.9
1,342,663 - -0.2
1,342,663 + 0.7
1,342,673 - -0.2
1,342,677 + -0.9
1,342,680 + 1.2
1,342,708 + 0.3
1,342,774 + 2.0
1,342,797 - 1.0
1,342,799 - 1.9
1,342,801 - 1.9
1,342,804 + 1.6
1,342,807 + 0.2
1,342,810 - 0.1
1,342,817 + 0.3
1,342,820 - -0.2
1,342,824 + -1.0
1,342,825 + 0.7
1,342,826 - 0.6
1,342,836 - 0.2
1,342,862 + -0.0
1,343,004 - 13298 mRNA_4930 0.16 0.7
1,343,147 + 13298 mRNA_4930 0.24 -0.7
1,343,153 + 13298 mRNA_4930 0.24 -1.6
1,343,262 - 13298 mRNA_4930 0.30 0.7
1,343,262 - 13298 mRNA_4930 0.30 -0.3
1,343,285 - 13298 mRNA_4930 0.32 0.6
1,343,296 - 13298 mRNA_4930 0.32 -0.7
1,343,707 + 13298 mRNA_4930 0.55 1.5
1,344,014 + 13298 mRNA_4930 0.73 1.3
1,344,423 - 1.3
1,344,619 - -0.5
1,344,743 + 0.3
1,345,334 + 13299 mRNA_4931 0.34 -1.2
1,345,373 + 13299 mRNA_4931 0.37 -0.4
1,345,471 + 13299 mRNA_4931 0.44 -0.1