Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4908

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4906: 13274 - K03540 RPR2, RPP21 ribonuclease P protein subunit RPR2, at 1273469 to 1274303 13274 mRNA_4907: 13275 - HMMPfam-Cytochrome c oxidase subunit VIIc-PF02935,SUPERFAMILY--SSF81427, at 1274592 to 1274946 13275 mRNA_4908: 13276 - K15163 SRB8, MED12 mediator of RNA polymerase II transcription subunit 12, fungi type, at 1275228 to 1281484 13276 mRNA_4909: 13277 - KOG1339 Aspartyl protease, at 1281980 to 1284451 13277

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,274,371 + 1.3
1,274,392 + 0.4
1,274,521 + 1.1
1,274,525 + 1.6
1,274,853 + 13275 mRNA_4907 0.74 -0.9
1,275,160 + 1.3
1,275,421 + 0.9
1,275,721 + -1.0
1,275,835 - 0.9
1,276,019 - 13276 mRNA_4908 0.13 1.2
1,276,316 - 13276 mRNA_4908 0.17 -0.9
1,276,838 + 13276 mRNA_4908 0.26 0.8
1,276,892 + 13276 mRNA_4908 0.27 0.6
1,276,898 + 13276 mRNA_4908 0.27 -0.4
1,277,235 - 13276 mRNA_4908 0.32 2.4
1,277,471 + 13276 mRNA_4908 0.36 -0.1
1,277,596 - 13276 mRNA_4908 0.38 1.3
1,277,609 - 13276 mRNA_4908 0.38 0.7
1,278,066 + 13276 mRNA_4908 0.45 -2.2
1,278,360 - 13276 mRNA_4908 0.50 -1.0
1,278,636 - 13276 mRNA_4908 0.54 -1.1
1,278,801 + 13276 mRNA_4908 0.57 0.2
1,278,826 - 13276 mRNA_4908 0.58 0.5
1,279,060 - 13276 mRNA_4908 0.61 1.5
1,279,521 + 13276 mRNA_4908 0.69 0.2
1,279,555 - 13276 mRNA_4908 0.69 1.1
1,279,576 + 13276 mRNA_4908 0.69 0.9
1,279,659 - 13276 mRNA_4908 0.71 -0.8
1,279,660 - 13276 mRNA_4908 0.71 -1.2
1,279,849 - 13276 mRNA_4908 0.74 0.5
1,279,867 + 13276 mRNA_4908 0.74 -1.1
1,279,950 + 13276 mRNA_4908 0.75 -0.8
1,279,955 - 13276 mRNA_4908 0.76 1.4
1,279,963 + 13276 mRNA_4908 0.76 1.8
1,280,240 + 13276 mRNA_4908 0.80 0.3
1,280,392 - 13276 mRNA_4908 0.83 -0.5
1,280,436 - 13276 mRNA_4908 0.83 -0.6
1,280,517 - 13276 mRNA_4908 0.85 2.0
1,280,538 - 13276 mRNA_4908 0.85 -0.7
1,280,681 + 13276 mRNA_4908 0.87 -0.7
1,280,997 - -1.0
1,281,121 - -0.5
1,281,136 + -0.1
1,281,264 - 1.2
1,281,276 + 1.6
1,281,531 + -0.3
1,281,532 - 4.0
1,281,541 - 0.3
1,281,543 - 0.7
1,281,545 - 0.4
1,281,554 + -2.2
1,281,555 - -1.4
1,281,560 - 1.0
1,281,702 - 0.5
1,281,707 - 0.8
1,281,712 + -0.5
1,281,714 - -1.3
1,281,714 - 1.1
1,281,716 + -0.0
1,281,717 + -1.4
1,281,718 + 0.8
1,281,758 - -0.3
1,281,758 - 1.7
1,281,760 - -0.5
1,281,760 + 1.0
1,281,760 + -0.5
1,281,765 - 2.4
1,281,773 - -0.6
1,281,779 + -0.3
1,281,789 + -2.0
1,281,795 + -0.4
1,281,890 - 2.1
1,282,041 - 0.1
1,282,045 - 1.1
1,282,049 + -0.3
1,282,049 - 0.8
1,282,051 + -0.0
1,282,160 - -0.1
1,282,194 - 1.0
1,282,201 - 0.1
1,282,204 + 0.6
1,282,205 - 0.3
1,282,339 - 13277 mRNA_4909 0.15 0.1
1,282,352 - 13277 mRNA_4909 0.15 -1.2
1,282,370 + 13277 mRNA_4909 0.16 0.2